Locus 3896

Sequence ID 3R_DroMel_CAF1
Location 10,606,023 – 10,606,113
Length 90
Max. P 0.931653
window6241

overview

Window 1

Location 10,606,023 – 10,606,113
Length 90
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 65.43
Mean single sequence MFE -21.63
Consensus MFE -11.79
Energy contribution -12.13
Covariance contribution 0.34
Combinations/Pair 1.25
Mean z-score -1.65
Structure conservation index 0.55
SVM decision value 1.21
SVM RNA-class probability 0.931653
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10606023 90 + 27905053
AGUUAGGUUUUAUAUAUGUACAUAUUAUAUAUGUACAUACCUAGGUACACCAGGUAUGUGAGUGCUUGUUGUGGCUGCGCUUGUUUUC-------GG
...(((((......(((((((((((...)))))))))))..(((.((((.(((((((....))))))).)))).))).))))).....-------.. ( -25.00)
>DroEre_CAF1 64824 68 + 1
AC---AUGUGUAUAC---------------GAGUAUAUAC----GUAGACCAGGUAUGUGAGUGCUUAUUGUGGCUGCGCUUGUUUUC-------GG
..---.........(---------------(((.(((..(----((((.((((((((....))))).....))))))))..))).)))-------). ( -17.30)
>DroYak_CAF1 66075 82 + 1
AGUUAAGGUCUAUAC---------------AUAUGUAUACCUAGGUACACUGGGUAUGUGAGUGCUGAUUGUGACUGCGCUUGUUUUCGGUGUUCGG
.....((((..((((---------------....)))))))).((.((((((((...(..(((((...........)))))..).)))))))))).. ( -22.60)
>consensus
AGUUAAGGUCUAUAC_______________AUGUAUAUACCUAGGUACACCAGGUAUGUGAGUGCUUAUUGUGGCUGCGCUUGUUUUC_______GG
..................................((((((((.((....))))))))))((((((...........))))))............... (-11.79 = -12.13 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:47 2006