Locus 3894

Sequence ID 3R_DroMel_CAF1
Location 10,601,164 – 10,601,255
Length 91
Max. P 0.993892
window6239

overview

Window 9

Location 10,601,164 – 10,601,255
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 94.07
Mean single sequence MFE -23.93
Consensus MFE -20.98
Energy contribution -21.58
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.88
SVM decision value 2.43
SVM RNA-class probability 0.993892
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10601164 91 - 27905053
AUGGAAUUUCUUGCAGUGCACAGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA
(((((....(((((...))).))(((((((..((((((((..(.((((.....)))).)..)))....)))))..))))))).)))))... ( -25.80)
>DroSec_CAF1 49336 91 - 1
UUGGAAUUUCUUGCAGUGCACCGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA
.((((......(((...)))...(((((((..((((((((..(.((((.....)))).)..)))....)))))..))))))).)))).... ( -25.00)
>DroSim_CAF1 50361 91 - 1
UUGGAAUUUCUUGCAGUGCACCGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA
.((((......(((...)))...(((((((..((((((((..(.((((.....)))).)..)))....)))))..))))))).)))).... ( -25.00)
>DroEre_CAF1 60089 90 - 1
AAGGAAUUAUUU-CAGUGCACAGGCUCCCAUUGUUGCGAUUUACAUGCAUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA
..(((.......-....((....))(((((..((((((((.....(((.....))).....)))....)))))..)))))...)))..... ( -18.00)
>DroYak_CAF1 61241 91 - 1
AUGGCAUUUUUUGCAGUGCACAGGUUCCCAUUGUUGCGAAUUACCUGCUCUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA
.(((((((......))))).)).(((((((..(((((.......((((.....))))...........)))))..)))))))......... ( -25.87)
>consensus
AUGGAAUUUCUUGCAGUGCACAGGUUCCCAUUGUUGCGAUUUACCUGCUUUCUGCAGCUUUAUCGAUAGUAGCCUUGGGAACAUCUAUUUA
.......................(((((((..((((((((....((((.....))))....)))....)))))..)))))))......... (-20.98 = -21.58 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:45 2006