Locus 3893

Sequence ID 3R_DroMel_CAF1
Location 10,598,360 – 10,598,451
Length 91
Max. P 0.843292
window6238

overview

Window 8

Location 10,598,360 – 10,598,451
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 87.48
Mean single sequence MFE -27.86
Consensus MFE -23.30
Energy contribution -23.08
Covariance contribution -0.22
Combinations/Pair 1.14
Mean z-score -2.23
Structure conservation index 0.84
SVM decision value 0.76
SVM RNA-class probability 0.843292
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10598360 91 + 27905053
GACCACAAUCGCCUUUGGCCAUUCCUGCUGACUAUC--UCCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCUGGAGUCCCACUUCCAUCUCUCC
(((((((((.......((((((..............--....)---)))))(((....)))...)))))))))(((((......)))))....... ( -27.27)
>DroSec_CAF1 46539 93 + 1
GACCACAAUCACCUUCGGCCAUUCCUGCUGACUAUCUCUCCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCUGGAGUCCCACUUCCAUCUCUCC
(((((((((.......((((((.......(.....)......)---)))))(((....)))...)))))))))(((((......)))))....... ( -27.82)
>DroSim_CAF1 47623 93 + 1
GACCACAAUCGCCUUCGGCCAUUCCGGCUGACUAUCUCUCCCG---UGGCCGCUAGACAGCUUUGUUGUGGUCUGGAGUCCCACUUCCAUCUCUCC
(((((((((.((((.((((((...(((..((.....))..)))---))))))..))...))...)))))))))(((((......)))))....... ( -31.30)
>DroEre_CAF1 57667 91 + 1
GACCACAAUCGCCUUCGGCCAUUCCUGCUGACUAUC--UGCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCAGGAGUCCCACUUCCAUCUCUCC
((((((((((.((..(((((((....((.(.....)--.)).)---))))))..))...)....))))))))).((((......))))........ ( -31.20)
>DroYak_CAF1 58418 91 + 1
GACCACAAUCGCCCUCGGCCAUUCCUGCCGACUAUC--UCCCG---UGGCCGCUGGACAGCUUUGUUGUGGUCAGGAGUCCCACUUCCAUCUCUCC
(((((((((.((((.(((((((..............--....)---))))))..))...))...))))))))).((((......))))........ ( -28.87)
>DroAna_CAF1 43347 81 + 1
GGCCACAAUCGCCUUUGGCCAU-------GACUAUC--UCCCGCUAUAGCCGCUCGACAGCUUUGUUGUGGUUAAGAGUCC----UCUGUCUCU--
(((((..........)))))..-------(((...(--((..((((((((.(((....)))...))))))))...)))...----...)))...-- ( -20.70)
>consensus
GACCACAAUCGCCUUCGGCCAUUCCUGCUGACUAUC__UCCCG___UGGCCGCUGGACAGCUUUGUUGUGGUCAGGAGUCCCACUUCCAUCUCUCC
(((((((((.......(((((.........................)))))(((....)))...))))))))).((((......))))........ (-23.30 = -23.08 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:44 2006