Locus 3892

Sequence ID 3R_DroMel_CAF1
Location 10,596,596 – 10,596,714
Length 118
Max. P 0.941503
window6237

overview

Window 7

Location 10,596,596 – 10,596,714
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 81.14
Mean single sequence MFE -25.37
Consensus MFE -17.40
Energy contribution -17.30
Covariance contribution -0.10
Combinations/Pair 1.16
Mean z-score -2.39
Structure conservation index 0.69
SVM decision value 1.32
SVM RNA-class probability 0.941503
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10596596 118 + 27905053
AUUAUGCUUUUUUUUUAGAUCAAUUGCAACUUUUAUAUAGCUUUAAUUAGGGUUGUUAAAGUGUUUCAACCCUGUUAAGUUUACAUUUUCAAACGGAAAUACUUUAGUUGAAAGCAAA
....(((((((...(((((...................(((((....((((((((...........))))))))..)))))...((((((....))))))..)))))..))))))).. ( -23.20)
>DroSim_CAF1 45906 114 + 1
AUUAUG--UU--UUUAAAAUCAAUUACCACUUUUAUAUAGCUUUUAUUAGGGUUGUUAGAGUUUUUCAACCCUGUGAAGCUUACCUUUUCAAACGGAAAUACUUUAGUUGAAAGCAAA
....((--((--(((((.....................((((((...((((((((...........)))))))).))))))....(((((....)))))........))))))))).. ( -24.10)
>DroYak_CAF1 56633 114 + 1
AUUGUG--AU--UUAAAAAUAAAUUGCAGCAUUCAAAUUGCUUUUAUUAGGGUUGUUAACGUUUUGCAACCCUCUUAAAUAUACCUAUUCAAGCGGAAGUACUCCAGUUGAAAGCAAA
.(((..--((--(((....)))))..)))........(((((((((..((((((((.........))))))))..))))........(((((..(((.....)))..)))))))))). ( -28.80)
>consensus
AUUAUG__UU__UUUAAAAUCAAUUGCAACUUUUAUAUAGCUUUUAUUAGGGUUGUUAAAGUUUUUCAACCCUGUUAAGUUUACCUUUUCAAACGGAAAUACUUUAGUUGAAAGCAAA
.......................((((...........(((((....((((((((...........))))))))..)))))......(((((..(((.....)))..))))).)))). (-17.40 = -17.30 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:43 2006