Locus 3891

Sequence ID 3R_DroMel_CAF1
Location 10,594,425 – 10,594,534
Length 109
Max. P 0.861095
window6236

overview

Window 6

Location 10,594,425 – 10,594,534
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 95.45
Mean single sequence MFE -29.10
Consensus MFE -24.62
Energy contribution -25.02
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.85
SVM decision value 0.83
SVM RNA-class probability 0.861095
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10594425 109 - 27905053
AGUUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGGGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAU-
....((((((.(....((((..(((((((((.(((((.(((((...))))))))))))))).((((.(((.......)))..)))).))))..)))).).))))))...- ( -27.90)
>DroSec_CAF1 42915 109 - 1
AGUUUUCGUAUAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGG-GGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUA
....((((((((....((((..(((((((((.(((((.(((((...))))))))))))))).((((.-((........))..)))).))))..)))).)))))))).... ( -29.00)
>DroSim_CAF1 43777 110 - 1
AGUUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGGGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUA
....((((((.(....((((..(((((((((.(((((.(((((...))))))))))))))).((((.(((.......)))..)))).))))..)))).).)))))).... ( -27.90)
>DroEre_CAF1 52664 109 - 1
AUGUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCUAAGUCAUAAGCCAAGAUCGCUGGGGGCA-UUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUC
(((((.((((.(....((((..(((((((((.(((((.(((((...))))))))))))))).(((((((...-...)))))))....))))..)))).).))))))))). ( -31.40)
>DroYak_CAF1 54356 110 - 1
AUUUUUCGUAGAAGCAUUUCUGAGUUGUCUUUGGUUUUAUGGCUAAGUCAUAAGCCAAGAUCGCUGAGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUC
(((((((((((.(((.......(((((((((..((.((.(((((........))))).))..))..)))))))))......))).)))...))))))))........... ( -29.32)
>consensus
AGUUUUCGUAGAAGCAUUUUUGAGUUGUCUUUGGUUUUAUGGCCAAGUCAUAAGCCAAGAUCGCAGGGGGCAAUUAUUCUAGCUGCUAAUUUGAAAAGUGUACGAGCAUA
....(((((....((((((((.(((.(((((.(((((.(((((...))))))))))))))).)).((.(((..........))).))....).))))))))))))).... (-24.62 = -25.02 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:42 2006