Locus 3890

Sequence ID 3R_DroMel_CAF1
Location 10,591,558 – 10,591,656
Length 98
Max. P 0.995152
window6235

overview

Window 5

Location 10,591,558 – 10,591,656
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 94.99
Mean single sequence MFE -19.32
Consensus MFE -17.46
Energy contribution -17.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.90
SVM decision value 2.55
SVM RNA-class probability 0.995152
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10591558 98 + 27905053
GCCAUUUUUUACCAGUUUGACAAGUUUUUUUUUUUGCAGUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC
(((.........((((..(((((((..((........))..))))))).......))))........)))........((((((......)))))).. ( -17.63)
>DroSec_CAF1 40056 95 + 1
GCCAUU-UUUACCAGUUUGACAAGUUUUU--UUUUGCAGUCACUUGUCUGUGCCUGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC
(((...-.....(.....).(((((..((--....((((.(((......))).)))).))..))))))))........((((((......)))))).. ( -22.00)
>DroSim_CAF1 40884 94 + 1
GCCAUU-UUUACCAGUUUGACAAGUUUU---UUUUGCAAUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC
(((...-.....((((..(((((((..(---(.....))..))))))).......))))........)))........((((((......)))))).. ( -18.49)
>DroEre_CAF1 49683 93 + 1
GCCAAU-UUUACCAGUUUGACAAGUUU----UUUUGCAGCCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC
(((...-.....(.....).(((((..----((..(((((.((......))))).)).))..))))))))........((((((......)))))).. ( -18.80)
>DroYak_CAF1 51270 92 + 1
GCCAUU-UUUACCAGUUUGACAAGUUU-----UUUGCAGUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC
(((...-.....(.....).(((((..-----((.((((.(((......))))).)).))..))))))))........((((((......)))))).. ( -19.70)
>consensus
GCCAUU_UUUACCAGUUUGACAAGUUUU___UUUUGCAGUCACUUGUCUGUGCUCGCUGACUACUUGGGCUUCUACUCACAACAUCUUCUUGUUGUCC
(((.........((((..(((((((................))))))).......))))........)))........((((((......)))))).. (-17.46 = -17.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:41 2006