| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,583,234 – 10,583,424 |
| Length | 190 |
| Max. P | 0.745657 |
| Location | 10,583,234 – 10,583,328 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 84.38 |
| Mean single sequence MFE | -16.42 |
| Consensus MFE | -12.18 |
| Energy contribution | -12.07 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10583234 94 - 27905053 GAGUUAACCAAAAACAAAAAACAAAAAACAGUAAAGGAGAAAAAU---AACAGACAAUGAGAUGUUGAUCAUGUUGUAGUUGGCAGGUUAACAAGCA ..(((((((...(((.....((........))...........((---((((((((((.....)))).)).)))))).)))....)))))))..... ( -16.10) >DroSec_CAF1 31884 89 - 1 GAGUUAACCAAAAACAAAA-----AAAAUAGUAAAGGAGAAAUAU---CGCAGACAAUGAGAUGUUGAUCAUGUUGUAGUUGGCAGGUUAACAAGCA ..(((((((..........-----............((..(((((---(.((.....)).))))))..)).((((......)))))))))))..... ( -19.10) >DroSim_CAF1 32316 92 - 1 GAGUUAACCAAAAACAAAAAA--AAAAAUAGUAAAGGAGAAAAAU---CACAGACAAUGAGAUGUUGAUCAUGUUGUAGUUGGCAGGUUAACAAGCA ..(((((((...(((......--.............((......)---)((((...((((........)))).)))).)))....)))))))..... ( -15.20) >DroEre_CAF1 41298 82 - 1 GAGUUAACCAAAAA------------UACAGUAAAGGAAAAAAAU---CACAGACAAUGAGAUGUUGAUCAUGUUGUAGUUGGCAGGUUAACAAGCA ..(((((((.....------------..........((......)---)...(((.(..(.(((.....))).)..).)))....)))))))..... ( -13.90) >DroYak_CAF1 42812 82 - 1 GAGUUAACCAAAAA------------UACAGUAAAGGAGAAAAAU---AACAGACAAUGAGAUGUUGAUCAUGUUGUAGUUGGCAGGUUAACAAGCA ..(((((((.....------------.................((---((((((((((.....)))).)).)))))).(....).)))))))..... ( -15.20) >DroAna_CAF1 28363 84 - 1 GAGUUGAGCCGAAA----------AAGA---UGGAGGAAAAAAGCCCCAACAGACAAUAAGAUGUUGAUCAUGUUGUAGUUGGCAGGUUAACAAGCA ..((((((((((..----------..(.---(((.((.......))))).)..((((((.(((....))).))))))..)))))...)))))..... ( -19.00) >consensus GAGUUAACCAAAAA__________AAAACAGUAAAGGAGAAAAAU___AACAGACAAUGAGAUGUUGAUCAUGUUGUAGUUGGCAGGUUAACAAGCA ..(((((((............................................((((((.(((....))).)))))).(....).)))))))..... (-12.18 = -12.07 + -0.11)
| Location | 10,583,328 – 10,583,424 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 90.87 |
| Mean single sequence MFE | -20.44 |
| Consensus MFE | -14.78 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10583328 96 + 27905053 UUUGCGUUAAAGCAAGCCAAGCAGUUGACGCAAA-AAAUUUGGUCUAAAGUUGACCGAAUGAGGAAAUGUAAACGAGGUUUCUGACAAUUAGAUAAU ((((((((((.((.......))..))))))))))-..((((((((.......))))))))..((((((.(.....).)))))).............. ( -24.80) >DroSec_CAF1 31973 97 + 1 UUUGCGUUAAAGCAAGCCAAGCAGUUAACGCAAAAAAAUGUGGUCUAAAAUUGACCGAAUGAGGAAAUGUAAACGAUGUUUCUGACAAUCAAAUAAU ((((((((((.((.......))..)))))))))).......((((.......))))((.((.((((((((.....))))))))..)).))....... ( -24.40) >DroSim_CAF1 32408 95 + 1 UUUGCGUUAAAGCAAGCCAAGCAGUUACCGCAAA-AAAUGUGGUCUAAAGUUGACCGAAUGAGGAAAUGUAAACGAUGUUUCUGACAAUCAAAUAA- ((((((.(((.((.......))..))).))))))-......((((.......))))((.((.((((((((.....))))))))..)).))......- ( -20.20) >DroEre_CAF1 41380 94 + 1 GGUGCGUUAAAGCAAGCCAAACAGUUAACGCAAA--AAGGUGGUCUAAAGUUGACCGAAUGAGGAAAUGUAAACGAUGUUU-UGACAAUAAAAUAAU .....(((((((((.(((.....((....))...--..)))((((.......))))....................)))))-))))........... ( -16.00) >DroYak_CAF1 42894 92 + 1 UUUGCGUUAAA----GCCAAACAGUUAACGCAAA-AAAGGUGGCCUAAAGUUGACCGAAUGAGGAAAUGUAAACGAUGUUUCUGACAAUUAAAUAAU ((((((((((.----.........))))))))))-...((((((.....))).)))...((.((((((((.....))))))))..)).......... ( -16.80) >consensus UUUGCGUUAAAGCAAGCCAAGCAGUUAACGCAAA_AAAUGUGGUCUAAAGUUGACCGAAUGAGGAAAUGUAAACGAUGUUUCUGACAAUCAAAUAAU .(((((((((..............))))))))).......(((((.......)))))..((.((((((((.....))))))))..)).......... (-14.78 = -15.62 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:40 2006