| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,579,644 – 10,579,764 |
| Length | 120 |
| Max. P | 0.807371 |
| Location | 10,579,644 – 10,579,764 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.58 |
| Mean single sequence MFE | -43.92 |
| Consensus MFE | -33.96 |
| Energy contribution | -34.88 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10579644 120 - 27905053 UUGCCAUUGCCAGGCUAUCCAGGCGGCUCGUAAAGCCAUCGCCAUGUAUGCGGAGGAAACGGGUCUUCCCAGGAGCUUGGCCAUUGCCCUGGACACCAAGGGUCCGGUAAUCAAUCCACA (((((...(((((((..(((.(((((((.....))))...))).....((.((((((......))))))))))))))))))....(((((((...)).)))))..))))).......... ( -44.20) >DroSec_CAF1 28446 120 - 1 AUGCCAUUGCCAGGCAAUCCAGGCGGCACGUAAAGCCAUCGCCAUGUAUGUGGAGGAAACGGGUCUUCCCAGAUGCUUGGCCAUUGCCCUGGACACCAAGGGUCCAGAAAUCAAUCCACA ..((.((.((((((((.(((.(..(((.......)))..).((((....)))).)))...(((....)))...)))))))).)).)).((((((.(....)))))))............. ( -42.50) >DroSim_CAF1 28847 120 - 1 UUGCCAUUGCCAGGCAAUACAGGCGGCACGUAAAGCCAUCGCCAUGUAUGUGGAGGAAACGGGUCUUUCCAGGAGCUUGGCCAUUGCACUGGACACCAAGGGUCCGGCAAUCAAUCCACA (((((...(((((((.(((((((((((.......)))...))).))))).(((((((......)).)))))...))))))).........((((.(....)))))))))).......... ( -42.40) >DroEre_CAF1 37621 108 - 1 UUGCCACUGUCAGGCAAUCCAGGCGGCUCGUAAAGCCAUCUCCAUGUACGUGGAGGAAACGGGUCUACCCCGGAGCUUGGCCAUUGCUCUGGACACCAAGGGCCAGGA------------ ..(((..(((((((((((((((((((((.....)))).(((((((....)))))))...((((.....))))..))))))..))))).)).)))).....))).....------------ ( -44.00) >DroYak_CAF1 39076 120 - 1 UUGCCACUGCCAGGCAAUCCAGGCGGCUCGUAAGGCCAUCUCCAUGUAUGUGGAGGAAACGGGUCUUCCCAGGAGCUUGGCCAUCGCCCUGGACACCAAGGGCCCGGAAAUCCAUCCACA ........(((((((..(((....(((.(....)))).(((((((....)))))))....(((....))).))))))))))....(((((((...)).)))))..(((......)))... ( -46.50) >consensus UUGCCAUUGCCAGGCAAUCCAGGCGGCUCGUAAAGCCAUCGCCAUGUAUGUGGAGGAAACGGGUCUUCCCAGGAGCUUGGCCAUUGCCCUGGACACCAAGGGUCCGGAAAUCAAUCCACA ..((.((.(((((((..(((.(..(((.......)))..).((((....)))).)))...(((....)))....))))))).)).)).((((((.(....)))))))............. (-33.96 = -34.88 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:38 2006