Locus 3886

Sequence ID 3R_DroMel_CAF1
Location 10,572,124 – 10,572,243
Length 119
Max. P 0.589984
window6229

overview

Window 9

Location 10,572,124 – 10,572,243
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.66
Mean single sequence MFE -37.75
Consensus MFE -25.03
Energy contribution -24.65
Covariance contribution -0.38
Combinations/Pair 1.40
Mean z-score -1.33
Structure conservation index 0.66
SVM decision value 0.11
SVM RNA-class probability 0.589984
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10572124 119 - 27905053
UGAGGAAGAUUCGGCCCGAAGGACCAU-UGUUCCCUGAUGGCAUGACCGUAGACACCGAUGGCAAUAUCUACGUGGCCACCUUCAAUGGUGGCACCGUCUUCAAGGUCAAUCCAAGGUAG
...(((.......(((...(((.....-.....)))...))).(((((..((((...((((....))))...(..((((((......))))))..)))))....))))).)))....... ( -37.60)
>DroPse_CAF1 27270 119 - 1
UCAGGAAGAUCCGACCCAAUACACCGC-UCUAUCCCGAUGGCAUGACCAUCGACACCGAGGGCAACAUCUAUGUGGCCACCUUCAAUGGUGGUUCCGUCUUCAAGGUGAAUCCAAGGUGA
...((.....)).........((((((-(((....((((((.....))))))......)))))..((((((((..((((((......))))))..))).....))))).......)))). ( -40.40)
>DroEre_CAF1 30355 119 - 1
UGAGGAAAAUCCGCCCCGAAGGACCAU-UGUUCCCUGAUGGCAUGACCAUCGAUACCGAGGGCAAUAUUUACGUGGCCACCUUCAACGGUGGAACCGUCUUCAAGGUCAAUCCAAGGUGA
((((((...((((((..(((((.((((-(((((((((((((.....)))))(....).)))).)))).....))))...)))))...))))))....)))))).((.....))....... ( -37.00)
>DroWil_CAF1 24936 119 - 1
UGCGUCGCAACAAU-CCACAGGAUAAUCUGAAACCCGAUGGCAUGACUGUUGAUACCGAUGGCAACAUCUAUGUGGCCACUUUCAAUGGUGCCACCGUCUUCAAGGUUAAUCCAAGGUUA
(((...))).....-.....(((((((((..((..((.((((...((((((((....(.((((.(((....))).)))))..)))))))))))).))..))..))))).))))....... ( -30.50)
>DroAna_CAF1 20792 119 - 1
UGAGGAGCAUCCGUCCGGAAGGCCCCC-UCUUCCCCGAUGGCAUGACCAUCGACACCGAGGGCAACCUCUACGUGGCCACCUUCAACGGCGGCACUGUCUUCAAGGUCGACCCGAAGUAA
.((((.((.(((....)))..))..))-)).....((((((.....)))))).(((.((((....))))...)))(((.((......)).))).....((((..((....)).))))... ( -40.60)
>DroPer_CAF1 26457 119 - 1
UCAGGAAGAUCCGACCCAAUACACCGC-UCUAUCCCGAUGGCAUGACCAUCGACACCGAGGGCAACAUCUAUGUGGCCACCUUCAAUGGUGGUUCCGUCUUCAAGGUGAAUCCAAGGUGA
...((.....)).........((((((-(((....((((((.....))))))......)))))..((((((((..((((((......))))))..))).....))))).......)))). ( -40.40)
>consensus
UGAGGAAGAUCCGACCCAAAGGACCAC_UCUACCCCGAUGGCAUGACCAUCGACACCGAGGGCAACAUCUACGUGGCCACCUUCAAUGGUGGCACCGUCUUCAAGGUCAAUCCAAGGUGA
.....................((((..........((((((.....)))))).....((((((..(((....)))((((((......))))))...))))))..))))............ (-25.03 = -24.65 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:35 2006