Locus 3880

Sequence ID 3R_DroMel_CAF1
Location 10,550,131 – 10,550,239
Length 108
Max. P 0.695684
window6219

overview

Window 9

Location 10,550,131 – 10,550,239
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 88.58
Mean single sequence MFE -30.20
Consensus MFE -23.59
Energy contribution -24.27
Covariance contribution 0.68
Combinations/Pair 1.16
Mean z-score -2.26
Structure conservation index 0.78
SVM decision value 0.34
SVM RNA-class probability 0.695684
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10550131 108 + 27905053
AUUUAUUGUUAUUUGGCUUGUGUAGUCCCCAAGCAUAGGUGUAAUUGUUGAGGGAAGAAAAUAGGAGUUGUACGUUCAAAGAUCGGCUUGGUAACAGGAACUAGUUCG
.....(((((((..(((((((....((((..((((..........))))..)))).....))).((.(((......)))...))))))..)))))))(((....))). ( -22.00)
>DroSec_CAF1 24987 108 + 1
AGUUCUUGUUAUUUGGCAUAUAUAGUCCCCAAGCUGAAGUGUGAUUGUUGAAGGAAUAAUAUAGGAGUUGUUCGUUCGAUGAUCGGCUUGGUAACAGGAGCUAGUUCG
((((((((((((..(((.....((((......)))).....((((..(((((.(((((((......))))))).)))))..)))))))..))))))))))))...... ( -39.10)
>DroSim_CAF1 25327 107 + 1
AGUUUUUGUUAUUUGGCAUGUAUAGUCC-CAAACUGAAGUGUAAUUGUUGAAGGAAGAAUAUAGGAGUUGUUCGUUCGAUGAUCGGCUUGGUAACAGGAACUAGUUCG
((((((((((((..(((.....((((..-...)))).......((..(((((.(((.(((......))).))).)))))..))..)))..))))))))))))...... ( -29.50)
>consensus
AGUUAUUGUUAUUUGGCAUGUAUAGUCCCCAAGCUGAAGUGUAAUUGUUGAAGGAAGAAUAUAGGAGUUGUUCGUUCGAUGAUCGGCUUGGUAACAGGAACUAGUUCG
((((((((((((..(((...............((......)).(((((((((.(((.(((......))).))).)))))))))..)))..))))))))))))...... (-23.59 = -24.27 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:25 2006