Locus 388

Sequence ID 3R_DroMel_CAF1
Location 1,463,519 – 1,463,639
Length 120
Max. P 0.745015
window642

overview

Window 2

Location 1,463,519 – 1,463,639
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -51.14
Consensus MFE -44.88
Energy contribution -45.68
Covariance contribution 0.80
Combinations/Pair 1.06
Mean z-score -1.32
Structure conservation index 0.88
SVM decision value 0.46
SVM RNA-class probability 0.745015
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1463519 120 - 27905053
UGCAGGCCUCACCACUCCCCGCCAGCAUCAAGUCGGCAUCUCCGCUGCGAAUGAAGCGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUAGGUC
....(((((.(((((((...(((.((.....)).)))...(((((((((.......)))).(((..((((((((((....)).)))).))))...))))))))....))))))).))))) ( -56.80)
>DroSec_CAF1 36030 120 - 1
UGCAGGCCUCACCACUACCCGCCAGCAUCACAUCGGCAUCUCCGCUGCGGAUGAAACGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUCGGUC
....((((..((((((....(((...........)))...(((((((((.......)))).(((..((((((((((....)).)))).))))...)))))))).....))))))..)))) ( -50.10)
>DroSim_CAF1 34314 120 - 1
UGCAGGCCUCACCACUCCCCGCCAGCAUCACGUCGGCAUCUCCGCUGCGGAUGAAGCGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUCGGUC
....((((..(((((((..(((...((((.((.((((......))))))))))..)))((((((..((((((((((....)).)))).))))...))))))......)))))))..)))) ( -58.30)
>DroEre_CAF1 37926 120 - 1
UGCAGGCCUCACCACUCCCCGCCAACAUCACAUCGGCAUCUCCGCUGCGGAUAAACCGCAUGGCAUCCCCCAGGGCAUGGGCACCUGUGGCGCAGGCUGUGGACACCGAGUGGUUCGGUC
....((((..(((((((...(((...........)))...((((((((((.....))))).(((...(((((((((....)).)))).)).)...))))))))....)))))))..)))) ( -46.50)
>DroYak_CAF1 36302 120 - 1
UGCAGGCCUCGCCACUCCCCGCCAGCAUCACAUCCGCAUCUCCGCUGCGAAUAAACCGCAUGGCAUCCCCCAGGGCAUGGGCACCAGUGGCGCAGGCUGUGGACACCGAAUGGUUCGGUC
.((((.((((((((((.(((((((((........((((.......))))........)).))))..(((...)))...)))....))))))).)))))))....(((((.....))))). ( -43.99)
>consensus
UGCAGGCCUCACCACUCCCCGCCAGCAUCACAUCGGCAUCUCCGCUGCGGAUGAACCGCAUGGCAUCGCCCAGGGCAUGGGCACCUGUGGCGCAGGCCGUGGACACCGAGUGGUUCGGUC
....((((..(((((((...(((...........)))...(((((((((.......)))).(((..((((((((((....)).)))).))))...))))))))....)))))))..)))) (-44.88 = -45.68 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:02 2006