| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,548,672 – 10,548,786 |
| Length | 114 |
| Max. P | 0.505405 |
| Location | 10,548,672 – 10,548,786 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 95.91 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -17.55 |
| Energy contribution | -18.67 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10548672 114 + 27905053 GUGAACUGCUGAUCUCUCACCUGCGUUUUAUGCCUUCUUAAGCCACUAACAACUUGCCAAGAAUUUUAUUCUAUUUUAAUUUGAUUCUCAAUGAGUUAUCUGCUUCACUUAUUA (((((..((.(((..((((.....(((....((........))....))).........((((((..(((.......)))..))))))...))))..))).)))))))...... ( -17.80) >DroSec_CAF1 23536 114 + 1 GUGAACUGCUGAUCUCUCACCUGCGUUUUAUGCCUUCUUAAGCCACUUACAACUGGCCAAGAAUUUGAUUCUAUUUUAAUUUGAAUCUCAAUGAGUUUUCUGUUUCACUUAUUA (((((..((.((...((((...((((...)))).(((((..((((........)))).)))))...(((((...........)))))....))))...)).)))))))...... ( -21.10) >DroSim_CAF1 23847 114 + 1 GUGAACUGCUGAUCUCUCACCUGCGUUUUAUGCCUUCUUAAGCCACUUACAACUGGCCAAGAAUUCGAUUCUAUUUUAAUUUGAAUCUCAAUGAGUUAUCUGCUUCACUUAUUA (((((..((.(((..((((...((((...)))).(((((..((((........)))).)))))...(((((...........)))))....))))..))).)))))))...... ( -24.40) >consensus GUGAACUGCUGAUCUCUCACCUGCGUUUUAUGCCUUCUUAAGCCACUUACAACUGGCCAAGAAUUUGAUUCUAUUUUAAUUUGAAUCUCAAUGAGUUAUCUGCUUCACUUAUUA (((((..((.(((..((((...((((...)))).(((((..((((........)))).)))))...(((((...........)))))....))))..))).)))))))...... (-17.55 = -18.67 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:20 2006