| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,542,288 – 10,542,395 |
| Length | 107 |
| Max. P | 0.988332 |
| Location | 10,542,288 – 10,542,395 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 89.68 |
| Mean single sequence MFE | -27.98 |
| Consensus MFE | -25.97 |
| Energy contribution | -26.20 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.988332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10542288 107 - 27905053 -------UUUCUGAUCUUGCUGCUUCUUUU-UCCCCACAUGUAUUUUCUCUUCUUUU--UUUGUUGUUGUAUCUUUUGGAUGCGAUGCAGCGAGUGCAGAUGGAGCAUAAUUAACAU -------..((((..((((((((.......-.....(((..................--..))).((((((((.....))))))))))))))))..))))................. ( -24.15) >DroSec_CAF1 17241 117 - 1 UACUUCGUUUCUGAUCUUGCUGCUUCUUUUUUACCCACAUGUAUUUUCUCUCCUUUUUUUUUUUUGUUGCAUCUUUCGGAUGCGAUGCAGCGAGUGCAGGAGGAGCAUAAUUAACAU ..((((..(((((..((((((((........(((......)))......................((((((((.....))))))))))))))))..)))))))))............ ( -29.90) >DroSim_CAF1 17056 114 - 1 UACUUCGUUUCUGAUCUUGCUGCUUCUUUUUUACCCACAUGUAUUUUCUCUUCUUU---UUUUUUGUUGCAUCUUUCGGAUGCGAUGCAGCGAGUGCAGGAGGAGCAUAAUUAACAU ..((((..(((((..((((((((........(((......))).............---......((((((((.....))))))))))))))))..)))))))))............ ( -29.90) >consensus UACUUCGUUUCUGAUCUUGCUGCUUCUUUUUUACCCACAUGUAUUUUCUCUUCUUUU__UUUUUUGUUGCAUCUUUCGGAUGCGAUGCAGCGAGUGCAGGAGGAGCAUAAUUAACAU .......((((((..((((((((........(((......)))......................((((((((.....))))))))))))))))..))))))............... (-25.97 = -26.20 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:19 2006