| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,535,402 – 10,535,492 |
| Length | 90 |
| Max. P | 0.567591 |
| Location | 10,535,402 – 10,535,492 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 69.92 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -14.48 |
| Energy contribution | -15.73 |
| Covariance contribution | 1.26 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10535402 90 - 27905053 GGGUCUCC--GGUCUUCGGAUUGCCGAUGUCCGUAAUUGACACCCACUUGCCGGGCCGAGUGGGUUGUAAGAUACAUAUGUGGGGCGCAAAA (.((((((--((.(.((((....)))).).))(((....(((((((((((......)))))))).)))....)))....).))))).).... ( -32.90) >DroGri_CAF1 10882 72 - 1 GUGUAUCUUACAGUG------C-CACGGUGGUGUAAUUGACACCCACUUACGAAACU---------AUCCGAU----AUCGAGGCUCUCAAA (((.....)))((.(------(-(.(((((((((.....)))))......((.....---------...))..----)))).))).)).... ( -15.60) >DroSec_CAF1 10344 79 - 1 ------UG--GGUCUCCGGAUU-CCGAAGUCCGUAAUUGACACCCACUUGCCGUGCCAAGUGGGUUGUAAGAU----AUGUGGGGCCCAAAA ------((--(((((((((((.-.....)))))......(((((((((((......)))))))).))).....----....))))))))... ( -33.00) >DroSim_CAF1 9623 85 - 1 GGGUCUCC--GGUCUCCGGAUU-CCGAAGUCCGUAAUUGACACCCACUUGCCGGGCCGAGUGGGUUGUAAGAU----AUGUGGGGCGCAAAA (.((((((--((.((.(((...-))).)).)))......(((((((((((......)))))))).))).....----....))))).).... ( -29.80) >DroEre_CAF1 10391 77 - 1 ----------GGUCUCCGGAUU-CCGAAGUCCGUAAUUGACACCCACUUGCCGAGCCGAGUGGGUUGUAAGAU----AUGUGGAGCGCAAAA ----------.((((((((((.-.....)))).......(((((((((((......)))))))).))).....----....)))).)).... ( -25.40) >DroYak_CAF1 9463 77 - 1 ----------GGUCUCUGGAUU-CCGAAGUCCGUAAUUGACACCCACUUGCCGAGCCGAGUGGGUUGCCAGAU----AUGUGGGGUGCAAAA ----------......((.(((-(((.....((((.(((.((((((((((......)))))))).)).))).)----))))))))).))... ( -23.30) >consensus ______C___GGUCUCCGGAUU_CCGAAGUCCGUAAUUGACACCCACUUGCCGAGCCGAGUGGGUUGUAAGAU____AUGUGGGGCGCAAAA ...........(((((((((((.....))))))........(((((((((......)))))))))................)))))...... (-14.48 = -15.73 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:16 2006