| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,531,652 – 10,531,745 |
| Length | 93 |
| Max. P | 0.923249 |
| Location | 10,531,652 – 10,531,745 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.91 |
| Mean single sequence MFE | -28.76 |
| Consensus MFE | -14.47 |
| Energy contribution | -14.07 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10531652 93 - 27905053 GAAUGACAGACUAAGAAGUUCUCAAAGUUU--CGGGGAAUUUUAUGU----UUCCCGAUG--AGCUGUCUUUCCUGGGCGAUUCGUCCGGAGAGAUAGUAA ...(((..((((....)))).))).....(--((((((((.....))----)))))))..--.(((((((((((.(((((...)))))))))))))))).. ( -36.10) >DroSec_CAF1 6950 82 - 1 AAAUGACAGGCUAAGAAGUUCUCAAAGGUU--CGGGGAAUUUUAUGU----UUCCCAAUG--AGCUGUCUUU-----------CGUCUGUAGAGAUAGUAA .....((((((.(((((((((......(((--.(((((((.....))----)))))))))--)))).)))).-----------.))))))........... ( -21.20) >DroSim_CAF1 5492 81 - 1 AAAUGACAGGCUAAGAAGUUCUCAAAGGUU--CGGGGAAUUUUAUGU----UUC-CAAUG--AGCUGUCUUU-----------CGUCUGUAGAGAUAGUAA .....((((((.((((..........((((--(.((((((.....))----)))-)...)--)))).)))).-----------.))))))........... ( -18.70) >DroEre_CAF1 6639 93 - 1 AAAUGACAGGGUAUGAAGUUCUCAAAGGUU--CGGGGAAUUUUAUGC----UCCCCAAUG--AGCUGUCUUUCCUCGGCGAUCCGUCUGGAAAGAUAGUAA ........(((((((((((((((.......--..)))))))))))))----)).......--.(((((((((((.(((....)))...))))))))))).. ( -35.10) >DroYak_CAF1 5729 101 - 1 AAAUGACAGGGUAAGAAGUUCUCAAAGGUUCUCGGGGAAUUUUAUGCAUGUUCCCCAAUGAGAGCUGUCUUUCCUGGGCGAUUCCUCCGCAAAGAUAGCAA ......(((((.((((((((((((...(....)(((((((.........)))))))..)))))))).))))))))).(((.......)))........... ( -32.70) >consensus AAAUGACAGGCUAAGAAGUUCUCAAAGGUU__CGGGGAAUUUUAUGU____UUCCCAAUG__AGCUGUCUUUCCU_GGCGAU_CGUCUGGAGAGAUAGUAA ..............(((((((((...........)))))))))....................(((((((((..................))))))))).. (-14.47 = -14.07 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:09 2006