Locus 3862

Sequence ID 3R_DroMel_CAF1
Location 10,514,736 – 10,514,842
Length 106
Max. P 0.580352
window6185

overview

Window 5

Location 10,514,736 – 10,514,842
Length 106
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 91.24
Mean single sequence MFE -20.42
Consensus MFE -14.80
Energy contribution -15.04
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.90
Structure conservation index 0.72
SVM decision value 0.09
SVM RNA-class probability 0.580352
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10514736 106 - 27905053
AUCCUUCCCACUCGGCAGCCAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUAACACGUGCACAAUGAGCACC---------UUGAGCACGCCACCCCAUUGUGGCUAACCCC
.............((..((((((((((....)))))...((((((....))))))....((((.......)))).---------))).))..(((((......)))))...)).. ( -23.40)
>DroSec_CAF1 163220 106 - 1
AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUACCACUUCCACAAUGAGCACC---------UUGAGCACGCCACCCUAUUGUGGCUAACCCC
.............(((..(((.(((((....)))))...((.((((((.((((....))))....))))))))..---------))).))).(((((......)))))....... ( -19.10)
>DroSim_CAF1 61077 115 - 1
AUCCUUCCCACACUACGCCAAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUACCACUUGCACAAUGAGCACCUUGAGCACCUUGAGCACGCCACCCUAUUGUGGCUAACCCC
................(((((.......((((.((....((((((....)))))).)).)))).......((.......))...))).))..(((((......)))))....... ( -22.50)
>DroEre_CAF1 61583 106 - 1
AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGUAGAUGACUCAUUUGAGUUACCACUUACACAAUGAGCACC---------UUGAGCACGCUACCCUAUUGUGGCUAACCCC
.............(((..(((.(((((....)))))...((.(((((((((((....)))))...))))))))..---------))).))).(((((......)))))....... ( -18.30)
>DroYak_CAF1 61704 106 - 1
AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGCACAUGACUCAUUUGAGUUACCACUUACACAAUGAACACC---------UUGAGCACGCCACCCUAUUGUGGCUAACCCC
.............(((..(((.......((....))...((((((....))))))....................---------))).))).(((((......)))))....... ( -18.80)
>consensus
AUCCUUCCCACACUGCGCCAAAACAAUCGCAAUUGUACAUGACUCAUUUGAGUUACCACUUACACAAUGAGCACC_________UUGAGCACGCCACCCUAUUGUGGCUAACCCC
..............((......(((((....)))))...((((((....)))))).................................))..(((((......)))))....... (-14.80 = -15.04 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:53 2006