| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,511,536 – 10,511,630 |
| Length | 94 |
| Max. P | 0.698679 |
| Location | 10,511,536 – 10,511,630 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 71.12 |
| Mean single sequence MFE | -19.37 |
| Consensus MFE | -10.00 |
| Energy contribution | -10.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10511536 94 + 27905053 ACUAAAAUAU--------CCCCCACUUGUGCUUGGCACACCCACUUUUCCG------AUUGAAACACACCUUGAGCCAACUCGCUUAUAUGCAAAUUU-CA-CGUCCCCU ..........--------........(((((...)))))...........(------(((((((........(((....)))((......))...)))-))-.))).... ( -11.70) >DroPse_CAF1 58027 109 + 1 ACUAAAUAACGCGGACACGCCUCACACCUCACUGACACUCCCACUUGCCCC-CCCCUGGGGGCACACACCUUGAAAUAACUCGCUUAUAUGCAAAUUCUCGACGCUCUGU ..........(((((...((.((......................((((((-(....)))))))..................((......))........)).))))))) ( -22.70) >DroPer_CAF1 57859 110 + 1 ACUAAAUAACGCGGACACGCCUCACACCUCUCUGCCACUCCCACUUGCCCCCCCCCUGGGGGCACACACCUUGAAAUAACUCGCUUAUAUGCAAAUUCUCGCCGCUCUGU ..........((((.(.............................(((((((.....)))))))..................((......))........)))))..... ( -23.70) >consensus ACUAAAUAACGCGGACACGCCUCACACCUCACUGACACUCCCACUUGCCCC_CCCCUGGGGGCACACACCUUGAAAUAACUCGCUUAUAUGCAAAUUCUCG_CGCUCUGU ..........(((................................((((((.......))))))..................((......))..........)))..... (-10.00 = -10.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:49 2006