Locus 386

Sequence ID 3R_DroMel_CAF1
Location 1,457,932 – 1,458,037
Length 105
Max. P 0.870156
window639

overview

Window 9

Location 1,457,932 – 1,458,037
Length 105
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 65.73
Mean single sequence MFE -25.92
Consensus MFE -15.83
Energy contribution -15.83
Covariance contribution 0.01
Combinations/Pair 1.16
Mean z-score -1.30
Structure conservation index 0.61
SVM decision value 0.87
SVM RNA-class probability 0.870156
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1457932 105 - 27905053
GCUGGCAAGUGAUAGCUUUUCCACAUCAGCUGUGGCGGAAAAGCUUAUCGAAAAGCUCUCUCUCUAGCGGUUGGAAUUUUCAAAAUGUGU---CGGUGGAAAAUAGUU
(((((((...((((((((((((.(((.....)))..)))))))).))))(((((..(((..((.....))..))).)))))......)))---))))........... ( -29.50)
>DroSec_CAF1 30354 84 - 1
GCUGGCGAGUGAUAGCUUUUCCAUAUCAGCUGUGCCGGAAAAGCUUAUCGAAAAGCUCUAUUACUAUUUCUUUUAGAUUUC------------------------UUU
(((..(((.....(((((((((..............)))))))))..)))...)))((((.............))))....------------------------... ( -18.36)
>DroEre_CAF1 32179 103 - 1
GGUGGCGAAUGGCAGC-UUUCCACAUCAGCUGUGCCGGAAAAGCUUUUCAAAAAGCUCUGU----AACAGUUAGGAUUUUCAAAAGGUGCCGCCGGUGAAAUAUCAUU
((((((.....(((((-(.........))))))(((.((((((((((....)))))((((.----......)))).)))))....)))))))))(((((....))))) ( -29.90)
>consensus
GCUGGCGAGUGAUAGCUUUUCCACAUCAGCUGUGCCGGAAAAGCUUAUCGAAAAGCUCUAU__CUAACAGUUAGAAUUUUCAAAA_GUG____CGGUG_AA_AU_AUU
...(((...(((((((((((((.(((.....)))..)))))))).)))))....)))................................................... (-15.83 = -15.83 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:59 2006