Locus 3858

Sequence ID 3R_DroMel_CAF1
Location 10,507,685 – 10,507,795
Length 110
Max. P 0.598715
window6179

overview

Window 9

Location 10,507,685 – 10,507,795
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 91.45
Mean single sequence MFE -24.14
Consensus MFE -18.37
Energy contribution -17.41
Covariance contribution -0.96
Combinations/Pair 1.24
Mean z-score -1.63
Structure conservation index 0.76
SVM decision value 0.13
SVM RNA-class probability 0.598715
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10507685 110 + 27905053
UUGAGAACAUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUCUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUAGGUCCUUUCAUGUUUUCCAUGAUUUCAUU
..((((((((..(((......)))(((((.(((..((.(((((......))))).))..)))...(((((....)))))..)))))....))))))))............ ( -25.40)
>DroSec_CAF1 156423 110 + 1
UUGAGAACUUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUCUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUCGGUCCUUUCAUGUUUUCCAUGAUUUCAUU
.(((((......(((......)))(((((.(((..((.(((((......))))).))..)))...(((((....)))))..)))))..(((((.....)))))))))).. ( -23.90)
>DroSim_CAF1 54270 110 + 1
UUGAGAACUUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUGUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUCGGUCCUUUCAUGUUUUCCAUGAUUUCAUU
.(((((......(((......)))(((((.(((..((.(((((......))))).))..)))...(((((....)))))..)))))..(((((.....)))))))))).. ( -23.90)
>DroEre_CAF1 54678 110 + 1
UUGAGAACUUAUCCAUUGUCCUGUGGAUCAAUAGUUCUAAGGAUUCUUUCUUUUUCAUUCAUAAUGCUGGCCUCUCGGUUCGGCCCUUUUAUGUUUUCCAUGAUUUCAUU
...((((((.((((((......))))))....))))))(((((.....))))).((((.(((((.(((((((....)).)))))....)))))......))))....... ( -22.80)
>DroYak_CAF1 54653 110 + 1
UUGAGAACUUAACCAUUGUCCUGUGGAUCAAUGUUUCUAAGGAUUCUAUCCUUUUGACUCAUAAUGCUGGUCUCUCGGCUCGGCACUUUCAUGUUUUCCAUGGUUUCAUU
.((((........((((((((...))).)))))..((.((((((...))))))..))))))...((((((((....))).)))))...(((((.....)))))....... ( -24.70)
>consensus
UUGAGAACUUAUCCAUUGUCCUGGGGAUCAAUGCUUCUAAGGAUUCUCUUCUUUUGGUCCAUAAUGCUGGUCUCUCGGCUCGGUCCUUUCAUGUUUUCCAUGAUUUCAUU
.(((((......((..........(((((((.......(((((.....)))))))))))).....(((((....)))))..)).....(((((.....)))))))))).. (-18.37 = -17.41 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:47 2006