Locus 385

Sequence ID 3R_DroMel_CAF1
Location 1,457,181 – 1,457,301
Length 120
Max. P 0.755972
window638

overview

Window 8

Location 1,457,181 – 1,457,301
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.67
Mean single sequence MFE -33.16
Consensus MFE -26.73
Energy contribution -27.29
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.63
Structure conservation index 0.81
SVM decision value 0.49
SVM RNA-class probability 0.755972
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1457181 120 + 27905053
GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUGAGUGUGUUCGAGAAUAACGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAAUGUAGAGCUCGAGCAGAUCUAUCUGCA
.(((((((((((....((((....((((...(((...((((.......)))))))...)))).(((....)))((((.....))))))))...))))))))).))(((((....))))). ( -33.90)
>DroSec_CAF1 29625 120 + 1
GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUAAGUGUAUUCCAGAAUGAUGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAGUGGAGAGCUCGAGCAGAUCUAUCUGCA
((((.(((((.(((((..(.............)..)))))))))))))).......(((((..(((((....(((((.....)))))......)))))..)))))(((((....))))). ( -36.72)
>DroSim_CAF1 27899 120 + 1
GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUAAGUCUAUUCCAGAAUGAUGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAGUGGAGAGCUCGAGCAGAUCUAUCUGCA
((((.(((((.(((((..(.............)..)))))))))))))).......(((((..(((((....(((((.....)))))......)))))..)))))(((((....))))). ( -35.62)
>DroEre_CAF1 31307 120 + 1
GUCAGUUCUGCGAGUGUCAAGGUAUGUCAUAAGAGUAUUCCAGAAUGACAAUGCUAUUGAGAGUUCCGAGGAAGAGAAUGAAUCUCUAGAAAAUAGAGAGCUCGAGCAGAUCUAUCUGCA
((((.(((((.(((((((..............)).)))))))))))))).......(((((.(((((......).))))...((((((.....)))))).)))))(((((....))))). ( -31.74)
>DroYak_CAF1 29723 120 + 1
GUCAGUUCUGCGAGUUUCAAGGUAUGUGAUAAGAUUAUUCCAGAAUGACGGAUUUAUCGAGAGUUUCGAGGAAGAGAAUGCAUCUCUGGAAAAAGAAGAACUGGAGCAAAUCUAUCUGCA
.((((((((.(...(((((..(.((((.....(((...(((........)))...))).....((((......))))..)))))..)))))...).)))))))).(((........))). ( -27.80)
>consensus
GUCAGUUCUGCGAAUGUCCAAGUAUCUCAUAAGUGUAUUCCAGAAUGACGAAGCUAUCGAGAGUUCCGAGGAAGAGAAUGAAUCUCUGGAAAAUGGAGAGCUCGAGCAGAUCUAUCUGCA
((((.(((((.(((((...................)))))))))))))).......(((((..(((((....(((((.....)))))......)))))..)))))(((((....))))). (-26.73 = -27.29 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:58 2006