| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,492,133 – 10,492,229 |
| Length | 96 |
| Max. P | 0.939010 |
| Location | 10,492,133 – 10,492,229 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 72.92 |
| Mean single sequence MFE | -30.92 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.80 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.33 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10492133 96 + 27905053 GUGUUGGUUGAGCU---G---CUGAUGCUGCUGCAGCAACGGGCUUUCCUGAGUAUAUGGAAUCCCCGUUGAUCUUUUCUAGUUCAUUCACUAUUUCAUUUA (((.....((((((---(---....(((....))).(((((((..((((.........))))..)))))))........)))))))..)))........... ( -28.10) >DroPse_CAF1 33314 93 + 1 AUGCGGUUUC---C---G---CUGACGGUGGCGUUGGAGCUGGCUUGCCCGAGUAGAUGGAGUCUCCGUUGAGCUUUUCAAACUCAUUCACGAUCUCGCCCA ..((((...)---)---)---)....(((((.(((((((..((.(((...((((.(((((.....)))))..))))..))).))..))).)))).))))).. ( -25.40) >DroSec_CAF1 38218 96 + 1 GUGGUGGUUGAGUU---G---CUGAUGCUGCUGCAGCAACGGGCUUUCCUGAGUAUAUGGAAUCCCCGUUGAUCUUUUCUAGUUCAUUCACUAUUUCAUUCA ((((((..(((...---(---(((.(((....))).(((((((..((((.........))))..)))))))........)))))))..))))))........ ( -29.40) >DroEre_CAF1 39049 96 + 1 GUGGUUGA---GCU---GCAGCUGCUGCUGCUGUAGCAACGGGCUUUCCUGAGUAUAUGGAAUCCCCGUUGAUCUUCUCCAGUUCAUUCACUAUUUCAUUCA (((..(((---(((---(((((....))))).....(((((((..((((.........))))..))))))).........))))))..)))........... ( -36.50) >DroWil_CAF1 36067 90 + 1 GAGAUGCUUC------------UGUUGGUGAUCCUGGAGCGGGUUUGCCCGAGUAAAUGGAGUCACCAUUUAAUUUCUCAAACUCAUUGACUAUUUCACCCA ((((((....------------.((..((((.....(((((((....))))..(((((((.....)))))))....)))....))))..))))))))..... ( -25.00) >DroYak_CAF1 38680 102 + 1 GUGGUGGAGAAGCUACUGCUGCUGCUGCUGCAGCAGCCACGGGCUUUCCUGAGUAUAUGGAAUCCCCGUUAAUCUUCUCCAGUUCAUUCACUAUUUCAUUCA ((((((((((((.....((((((((....)))))))).(((((..((((.........))))..)))))....))))))))......))))........... ( -41.10) >consensus GUGGUGGUUC_GCU___G___CUGAUGCUGCUGCAGCAACGGGCUUUCCUGAGUAUAUGGAAUCCCCGUUGAUCUUCUCAAGUUCAUUCACUAUUUCAUUCA (((((((....................)))))))..(((((((..((((.........))))..)))))))............................... (-10.30 = -10.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:32 2006