Locus 3847

Sequence ID 3R_DroMel_CAF1
Location 10,489,689 – 10,489,809
Length 120
Max. P 0.720426
window6162

overview

Window 2

Location 10,489,689 – 10,489,809
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.17
Mean single sequence MFE -37.62
Consensus MFE -29.14
Energy contribution -29.94
Covariance contribution 0.80
Combinations/Pair 1.22
Mean z-score -1.70
Structure conservation index 0.77
SVM decision value 0.40
SVM RNA-class probability 0.720426
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10489689 120 - 27905053
UUAAAGGAUCGCUUAACCAUCACCACUUCGCCGUUGGCUUCGGCCAAUUUUAAAGCUCGAUGGAGGAGGCGGGCGGUUUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU
(((((((((.......(((((....(((....((((((....))))))....)))...)))))(((((..(((.((...((....)).)).))).))))).......))))))))).... ( -42.30)
>DroSec_CAF1 35766 120 - 1
UUAAAGGAUCGCUUGACCAUCACCACUUCGCCGUUGGCUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGGCGGGCGGUGUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU
(((((((((.((((.((((((....(((....((((((....))))))....)))...))))).).))))(((.((...((....)).)).))).............))))))))).... ( -40.10)
>DroSim_CAF1 36494 120 - 1
UUAAAGGACCUUUUAACCAUCACUACUUCGCCGUUGGCUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGGCGGGCGGUUUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU
(((((((((.......(((((....(((....((((((....))))))....)))...)))))..(((..(((.((...((....)).)).))).))).........))))))))).... ( -39.30)
>DroEre_CAF1 36518 120 - 1
UUGAAGGAGCGCUUAACCAUCACCACUUCACCGUUGGAUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGACGUGCGGUUUUCUUCGGAUCUUUCCAUUCUUGACCGUUGUCCUUAAGGUAU
...((((((((((((.(((((....(((....(((((......)))))....)))...))))).)))).)))((((((......(((....)))......))))))..)))))....... ( -33.00)
>DroYak_CAF1 36111 120 - 1
UUAAAGGAGCGCUUGACCAUCACCACUUCGCCGUUGGAUUCGGCCAGUUUCAGAGCUCGAUGCAUGAAACGGGCGGUUUUCUUGGGAUCCUUCCAUUCCUGACCAUUGUCCUUAAGGUAU
.....((((.(..((.....)).).))))(((...((((...(((.((((((..((.....)).)))))).)))((((......(((....)))......))))...))))....))).. ( -33.40)
>consensus
UUAAAGGAGCGCUUAACCAUCACCACUUCGCCGUUGGCUUCGGCCAAUUUUAGAGCUCGAUGGAUGAGGCGGGCGGUUUUCUUCGGAUCCUUCCACUCCUGACCAUUGUCCUUUAGGUAU
((((((((((((((..(((((....(((.(..((((((....))))))..).)))...)))))...))))))..((((......(((....)))......))))....)))))))).... (-29.14 = -29.94 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:31 2006