| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,476,489 – 10,476,585 |
| Length | 96 |
| Max. P | 0.612758 |
| Location | 10,476,489 – 10,476,585 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.67 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -14.65 |
| Energy contribution | -16.10 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10476489 96 - 27905053 UAAGAAG-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUAGAAUGAGAUAGUGGGUGCGGAAAAGGGGGA .......-----.......((((((((.....))))))))((((((((.((.(((.----(...).)))))..((........))))))))))............ ( -20.30) >DroVir_CAF1 20848 90 - 1 -A--AUUCACAGUAUAAACAAAACUAUCACGUACACACACACACACACUCAUACUCUCCUCAUAUGAG--GUCUUGCAUACGCAAGUGUGAGUAG---------- -.--.......((((...............))))............((((((((...((((....)))--)..((((....))))))))))))..---------- ( -18.26) >DroSec_CAF1 22549 96 - 1 UAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUAGAAUGCGAUAGUGGGUGCGGAAAAGGGGGA .......-----.......((((((((.....))))))))((((((((.....((.----...))..((((.((...)).)))).))))))))............ ( -22.80) >DroSim_CAF1 23241 96 - 1 UAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUAGAAUGCGAUAGUGGGUGCGGAAAAGGGGGA .......-----.......((((((((.....))))))))((((((((.....((.----...))..((((.((...)).)))).))))))))............ ( -22.80) >DroEre_CAF1 22695 96 - 1 CAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUUGAAUGCGAUAGUGGGUGCGGAAAAGGGGAA .......-----.......((((((((.....))))))))((((((((.((.(((.----(...).))))).((((....)))).))))))))............ ( -23.00) >DroYak_CAF1 22855 96 - 1 UAAGAAA-----CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG----CAAAGGAGUCGGAUUGAAUGCGAUAGUGGGUGCGGAAGAGGGGAA ...(..(-----(((........))))..).....(((((((((((((.((.(((.----(...).))))).((((....)))).)))))))))))))....... ( -24.10) >consensus UAAGAAA_____CAUAAACAAAGGUGUCACGUACACUUUUGCACUCACACGUACUG____CAAAGGAGUCGGAUAGAAUGCGAUAGUGGGUGCGGAAAAGGGGGA ...................((((((((.....))))))))((((((((.....((........))..((((.........)))).))))))))............ (-14.65 = -16.10 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:23 2006