Locus 384

Sequence ID 3R_DroMel_CAF1
Location 1,456,666 – 1,456,786
Length 120
Max. P 0.510997
window637

overview

Window 7

Location 1,456,666 – 1,456,786
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.41
Mean single sequence MFE -46.52
Consensus MFE -29.06
Energy contribution -30.82
Covariance contribution 1.76
Combinations/Pair 1.23
Mean z-score -1.68
Structure conservation index 0.62
SVM decision value -0.04
SVM RNA-class probability 0.510997
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1456666 120 + 27905053
GGGAGUGACGAGGAAUCCGGAAUGGAGGAUCCUCAAAAUCGGGGUCGCAACAGCGCCAUCCUCUCUAGCAGCGAAAGCGACCCGGUUCCGGAACCCCGUUACACCCUUGAAGGCAAGUAC
(((.((((((.((..((((((((.(((....))).......(((((((....((((...........)).))....))))))).))))))))..)))))))).))).............. ( -50.40)
>DroSec_CAF1 29073 118 + 1
--GAGUGACGAGGAACCCGGAGCAGAGGAUCCUGCCACUCAGGGUCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCCGUUACUCCCUCGAGGGCAAGUAC
--((((((((.((...((((((((((((((.(((.....)))((.(((....))))))))))))...(..((....))..)...)))))))...))))))))))((....))........ ( -48.60)
>DroSim_CAF1 27347 118 + 1
--GAGUGACGAGGAACCCGGAGCAGAGGAUCCUGCCACUCAGGGCCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCCGUUACUCCCUCGAGGGCAAGUAC
--((((((((.((...((((((((((((((((((.....))))((((...))))...)))))))...(..((....))..)...)))))))...))))))))))((....))........ ( -50.60)
>DroEre_CAF1 30753 120 + 1
GAAAGUGAAGAGGAAUCCGCAGCGGAGGAUCUUCCCGGUCAGGGUCGAAACUGCGUCGUCCUCUCUAGCAGCGGAAGCGAUACGCUUCCGGAUCCCUGUUACUCCCUCGUCGGCAGGUAC
....((..((((((...((((((((..((((.....))))....)))...)))))...))))))...))..((((((((...))))))))....((((((((......)).))))))... ( -42.30)
>DroYak_CAF1 29182 113 + 1
-------AAGAGGAGUCCGGAGCAGAGCAUUUUCCCAGUCAGGGUCGGAAUGGCGUCAUCCGCUCUAGCAGCGAUAGCGAUGCGAUUCCGGAACCCUGUUUCACCCUCGUGGGCACGUAC
-------..((((.((..(((((((........(((.....)))(((((((.(((((....((....)).((....))))))).)))))))....)))))))))))))............ ( -40.70)
>consensus
__GAGUGACGAGGAAUCCGGAGCAGAGGAUCCUCCCACUCAGGGUCGCAACGGCGCCAUCCUCUCUAGCAGCGAAAGCGACACGGUUCCGGAACCCCGUUACUCCCUCGAGGGCAAGUAC
....((((((.((..((((((((((((((((((.......)))(.(((....))).))))))))......((....))......))))))))..)))))))).(((....)))....... (-29.06 = -30.82 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:57 2006