| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,471,728 – 10,471,830 |
| Length | 102 |
| Max. P | 0.520710 |
| Location | 10,471,728 – 10,471,830 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.97 |
| Mean single sequence MFE | -29.59 |
| Consensus MFE | -21.32 |
| Energy contribution | -21.90 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10471728 102 - 27905053 UUGUCCCAACGGUCCAUUCCUCCAGCGCUGGCUCCGCUCAGCAGUGAUUUUCAACCCAACCAUCAGCAGC------AGGAACCGCUUUUGGUUCCCAAGUUGGAGGUG .((..((...))..))..(((((((((((((((......)))..((((.............)))).))))------.(((((((....)))))))...)))))))).. ( -32.22) >DroSec_CAF1 17686 99 - 1 UUGCCCCAACGGUCCAUUCCUCCAGCGCUGGCUCCGCUCAGCAGUGAUUUUCAACCCAAGC---AGCAAC------AAGAACCGCUUUUGGUUCCCAAGUUGGAGGUG ..(((.....))).....(((((((((((((((......)))..((.....)).......)---)))...------..((((((....))))))....)))))))).. ( -28.50) >DroSim_CAF1 18420 102 - 1 UUGCCCCAACGGUCCAUUCCUCCAGCGCUGGCUCCGCUCAGCAGUGAUUUUCAACCCAAGCAUCAGCAGC------AGGAACCGCUUUUGGUUCCCAAGUUGGAGGUG ..(((.....))).....((((((((((((.((..(((..(...((.....))..)..)))...))))))------.(((((((....)))))))...)))))))).. ( -33.30) >DroEre_CAF1 17922 102 - 1 UUGCCCCAACAAUCCAUUCCUCCAGCGCUGGCUCCACUCAGCGGUGAUUUUCAACCCAAGCAUCAACAGC------AUGAACCGCUUUUGGUUCCCAAGUUGGAGGUU ..................(((((((((((((((......)))(((........)))..........))))------..((((((....))))))....)))))))).. ( -31.00) >DroWil_CAF1 18772 108 - 1 AAUCCAAAUCUAUCCAUACCUCCGGCGUUGGCUCCACUCAGCAGUGAUUACCAUCACCAGCAGCAGCAGCAGCAACAACAACCAAUGCUGAUGCCCAAGUUUGAACCG ....(((((...............(((((((((......))).(((((....))))))))).)).(((.(((((...........))))).)))....)))))..... ( -21.90) >DroYak_CAF1 18121 102 - 1 UUGCCCCAACAAUCCAUUCCUCCAGCGCUGGCUCCACUCAGCACUGAUUUUCAACCCAAGCAUCAGCAGC------AUGAACCGCUUUUGGUUCCCAAGUUGGAGGUG ..................(((((((((((((((......))).((((((((......))).)))))))))------..((((((....))))))....)))))))).. ( -30.60) >consensus UUGCCCCAACGAUCCAUUCCUCCAGCGCUGGCUCCACUCAGCAGUGAUUUUCAACCCAAGCAUCAGCAGC______AAGAACCGCUUUUGGUUCCCAAGUUGGAGGUG ..................(((((((((((((......)))))....................................((((((....))))))....)))))))).. (-21.32 = -21.90 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:20 2006