| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,471,541 – 10,471,646 |
| Length | 105 |
| Max. P | 0.895989 |
| Location | 10,471,541 – 10,471,646 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.51 |
| Mean single sequence MFE | -25.31 |
| Consensus MFE | -15.53 |
| Energy contribution | -13.28 |
| Covariance contribution | -2.25 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10471541 105 - 27905053 ACAUUGCGAAUAUCAAGGCCGAGGAGAUUAGCCAAAUUGUAGCACAAUUGGCGGCGGCCGGUGGUGAUUUACAAAAUCCCAACAAUAAUAA---------UAACAACAACAUAG ...(((..(((((((.(((((.........(((((.(((.....))))))))..)))))..)))).)))..))).................---------.............. ( -23.10) >DroVir_CAF1 15410 93 - 1 CCAAUGCCAAUUUCAAGGUAGAUGAGAUUAGCCAAAUAGUGGCACAGCUGGCGGCGGCCAGCAGCGAGUUGCAUCAUAA---------------------CAACAACGACUUGC .((.((((........))))..))......((((.....))))...((((((....)))))).((((((((........---------------------......)))))))) ( -28.84) >DroSim_CAF1 18233 105 - 1 ACAUUGCCAAUAUCAAGGCCGAGGAGAUUAGCCAAAUUGUAGCACAAUUGGCGGCGGCCGGUGGUGAUUUACAAAAUCCCAAUAAUAAUAA---------UAACAACAACAUAG .(((..((........(((((.........(((((.(((.....))))))))..)))))))..))).........................---------.............. ( -22.90) >DroEre_CAF1 17741 99 - 1 ACAUUGCCAAUAUCAAGGCCGAGGAGAUUAGCCAAAUCGUUGCGCAAUUGGCAGCGGCCGGUGGUGAUUUACAAAAUCCCAAU------AA---------UAACAACAACAUAA .(((..((........(((..(.....)..)))...(((((((.......)))))))..))..))).................------..---------.............. ( -23.20) >DroWil_CAF1 18589 110 - 1 CCAAUGCAAAUAUCAAGGCCGAAGAGAUUAGCCAAAUUGUGGCCCAAUUGGCGGCAGCCGAUAGUGAUCUUCAUCAUCACAAUAACAACAGUUUGCACUUUAAUCACAAC---- ....(((((((.....(((((....((((.....)))).)))))..((((((....)))))).(((((.......)))))..........))))))).............---- ( -26.20) >DroMoj_CAF1 25210 102 - 1 CCAAUGCUAAUUUCAAGGCCGAUGAGAUUAGCCAGAUUGUGGCACAGCUGGCGGCUGCCAGUAGCGAGUUGCAUCAUAAUAACAAC---AA---------CAACAACAACUUGC .((((((((((((((.......))))))))))...)))).......((((((....)))))).((((((((...............---..---------......)))))))) ( -27.60) >consensus ACAAUGCCAAUAUCAAGGCCGAGGAGAUUAGCCAAAUUGUGGCACAAUUGGCGGCGGCCGGUAGUGAUUUACAAAAUCACAAUAA____AA_________UAACAACAACAUAC ...(((.....(((..(((..(.....)..)))........((...((((((....)))))).)))))...)))........................................ (-15.53 = -13.28 + -2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:19 2006