| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,466,801 – 10,466,901 |
| Length | 100 |
| Max. P | 0.795539 |
| Location | 10,466,801 – 10,466,901 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.67 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -19.01 |
| Energy contribution | -18.77 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10466801 100 - 27905053 U-AUAUUAAUUUAUCUUUU---------AUCCUAAUCGUUACUUACGGAAUAUAUUGACUUUAGCGGCUCUCAGCUGCCUGCGGUAUCCAUUCCGUUGAGAGGCGCAAAG .-.................---------........(((..((((((((((((((((.(....(((((.....)))))..)))))))..)))))).))))..)))..... ( -23.60) >DroSec_CAF1 12852 101 - 1 UCAUCUUGUAUCAUCUUGU---------AUUCUAAUCGUUAAUUACGGAAUAUAUUGACUUUAGCGGCUCUUAGCUGCCUGCGGUAUCCAUUCCGUUGGGAGGCGCAUAG ..........(((...(((---------((((....(((.....)))))))))).))).....(((.((((((((.(....)((........)))))))))).))).... ( -24.00) >DroSim_CAF1 13547 100 - 1 U-AUAUUUAUUUAUCUUGU---------AUCCUAAUCUUUACUUACGGAAUAUAUUGACUUUAGCGGCUCUCAGCUGCCUGCGGUAUCCAUUCCGCUGGGAGGCGCAAAG .-...........((.(((---------(((((((.......))).)).)))))..))((((.(((.((((((((.(....)((........)))))))))).))))))) ( -25.20) >DroEre_CAF1 12993 107 - 1 UAAUAAUUACAUAUACUAAUU---CCUAAUCGUGUGAUGUACUUACGGAAUAUAUUGACUUUGGCGGCUCUCAGCUGCCUGCGGUAUCCAUUCCGUUGGGAGGCGCAAAG .....(((((((.........---.......)))))))((.((.(((((((((((((.(...((((((.....)))))).)))))))..))))))).))...))...... ( -28.49) >DroYak_CAF1 13181 110 - 1 CCAUAGUUACAUAUAUUAUUUUUUCUAAAUUUUGAUCUGUACUUACGGAAUAUAUUGACUUUGGCGGCUCUCAGCUGCCGGCGGUAUCCAUUCCGUUGGGAGGCGCACAG .((.(((((.((((((.......((........))(((((....)))))))))))))))).))(((.((((((((.(....)((........)))))))))).))).... ( -29.30) >DroAna_CAF1 12262 94 - 1 U-GUU---UUUCAGUUUUU---------AGUCUUA---UUUCUUACGGAAUAUGUUCACUUUGGCGGCCCUCAGCUGCCUCCGGUAGCCGUUCCGUUGGGAGGCGCAUAG .-...---...........---------.(((((.---...((.(((((((..(((.(((..((((((.....))))))...)))))).))))))).)))))))...... ( -26.80) >consensus U_AUAUUUAUUUAUCUUAU_________AUCCUAAUCUUUACUUACGGAAUAUAUUGACUUUAGCGGCUCUCAGCUGCCUGCGGUAUCCAUUCCGUUGGGAGGCGCAAAG ...............................................................(((.((((((((.(....)((........)))))))))).))).... (-19.01 = -18.77 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:13 2006