Locus 3832

Sequence ID 3R_DroMel_CAF1
Location 10,451,164 – 10,451,256
Length 92
Max. P 0.935547
window6138

overview

Window 8

Location 10,451,164 – 10,451,256
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 76.76
Mean single sequence MFE -27.93
Consensus MFE -21.01
Energy contribution -21.07
Covariance contribution 0.06
Combinations/Pair 1.29
Mean z-score -1.58
Structure conservation index 0.75
SVM decision value 1.25
SVM RNA-class probability 0.935547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10451164 92 - 27905053
CUUAAAAUU---AAGUCGCGGCGAAAAGUCGAGUAAAACCCGCGGAAAUGCGCAUGCAAACGGCGUGUGGCCAGCAAAAUCGCUGCCAAGGCACC-----------
.........---...(((((((((....)))........))))))...(((((((((.....))))))(((.(((......))))))...)))..----------- ( -26.60)
>DroSec_CAF1 4424 92 - 1
CUUAAGAUU---GAGUCGCGGUGAAAGGUCAAAGAAAAACCGCGGAAAUGCGCAUGCAAACGGCGUGUGGCCAGCAAAAUCGCUGCCAAGGCACC-----------
.........---...(((((((................)))))))...(((((((((.....))))))(((.(((......))))))...)))..----------- ( -28.39)
>DroSim_CAF1 4473 92 - 1
CUUAAGAUU---GAGUCGCGGUGAAAAGUCGAAGAAAAACCGCGGAAAUGCGCAUGCAAACGGCGUGUGGCCAGCAAAAUCGCUGCCAAGGCAUC-----------
.........---...(((((((................)))))))..((((((((((.....))))))(((.(((......))))))...)))).----------- ( -29.09)
>DroEre_CAF1 4553 92 - 1
CUUACGAUC---GAGUCGCGGCGAAAAGUCAAGGAAAAUCCGCGGAAAUGCGCAUGCAAACGGCGUGUGGCCAGCAAAAUCGCUGCCAAGGCACC-----------
.........---..((((((((((........((.....))((((.....(((((((.....))))))).)).))....)))))))...)))...----------- ( -27.90)
>DroYak_CAF1 4446 92 - 1
CCUACGAUC---GAGUCGCGGCGACAAGUCAAGCAUAAUUCGCGGAAAUGCGCAUGCAAGCGGCGUGUGGCCAGCAAAAUCGCUGCCAAGGCACC-----------
(((......---..((((((((.....)))..((((....((((....)))).))))..)))))...((((.(((......))))))))))....----------- ( -29.50)
>DroMoj_CAF1 4176 104 - 1
AAUGUGAUAGCAAAGUUAA--UGAUAAUGCAAAUCGAAAUCGUGAAAAUGCACAUGGAAAAAACGUGUGGUCCGCAACUUUGCUGCUACUGCUGCAGCAGAAAAUA
.......((((((((((..--.(((...............(((....)))((((((.......)))))))))...))))))))))...((((....))))...... ( -26.10)
>consensus
CUUAAGAUU___GAGUCGCGGCGAAAAGUCAAAGAAAAACCGCGGAAAUGCGCAUGCAAACGGCGUGUGGCCAGCAAAAUCGCUGCCAAGGCACC___________
...............((((((..................))))))...(((((((((.....))))))((.((((......))))))...)))............. (-21.01 = -21.07 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:08 2006