Locus 3830

Sequence ID 3R_DroMel_CAF1
Location 10,442,998 – 10,443,093
Length 95
Max. P 0.577074
window6135

overview

Window 5

Location 10,442,998 – 10,443,093
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -29.12
Consensus MFE -18.60
Energy contribution -18.67
Covariance contribution 0.06
Combinations/Pair 1.36
Mean z-score -1.38
Structure conservation index 0.64
SVM decision value 0.09
SVM RNA-class probability 0.577074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10442998 95 - 27905053
CAGAUCCAGAGCCAAGUCGGGCGAUGAAGAUUUAUUGUAGUUCUCAUCGCUGUCGCUGGAUGUGGCCACUGGGGCAACGAGAUAAG-UAUUAAUUG
((.((((((..((.....))(((((((..(((......)))..))))))).....)))))).))(((.....)))...........-......... ( -29.00)
>DroVir_CAF1 789 90 - 1
CUGAUCUAAUGCCAGCUCGGGUGAUGAGGAUUUAUUGUAGUUCUCGUCGCUGUCGCUCGAUGCGGCCACUGCAG------AAUAAUUGAUUAAUUA
.(((((.(((.....(((((((((((((((((......)))))))))))).(((((.....)))))..))).))------....)))))))).... ( -28.50)
>DroPse_CAF1 1209 95 - 1
UAGGUCCAGGGCCAGUUCGGCUGAUGAAGAUUUAUUGUAGUUCUCGUCGCUGUCGCUGGACGCGGCUACUGCGGCACAGGAGAGAG-GAUAAGUUC
...((((.(..(((((.((((.(((((..(((......)))..)))))))))..))))).)((.((....)).))..........)-)))...... ( -31.30)
>DroMoj_CAF1 792 90 - 1
CAAAUCCAAUGCCAGCUCAGGUGAUGAAGAUUUAUUGUAAUUCUCGUCGCUGUCGCUCGAUGCGGCCACUGCGA------AAUAUGCGAUUAAUUA
..((((((......((...((((((((..(((......)))..))))))))(((((.....)))))....))..------....)).))))..... ( -22.90)
>DroAna_CAF1 1087 95 - 1
CAGAUCCAAAGCCAGGUCGGGCGAUGAAGAUUUAUUGUAGUUCUCAUCGCUGUCGCUGGAUGUGGGCACUGCGGCAAAUGGAUAAG-GAUUAAUUA
..(((((....(((.((((((((((((..(((......)))..)))))))).((((.....))))......))))...)))....)-))))..... ( -31.30)
>DroPer_CAF1 1006 95 - 1
UAGGUCCAGAGCCAGUUCGGCUGAUGAAGAUUUAUUGUAGUUCUCGUCGCUGUCGCUGGACGCGGCUACUGCGGCACAGGAGAGAG-GAUUAAUUC
..(((((...((((((.((((.(((((..(((......)))..)))))))))..))))).)((.((....)).))..........)-))))..... ( -31.70)
>consensus
CAGAUCCAAAGCCAGCUCGGGUGAUGAAGAUUUAUUGUAGUUCUCGUCGCUGUCGCUGGAUGCGGCCACUGCGGCA_AGGAAUAAG_GAUUAAUUA
..((((.....(((((...((((((((..(((......)))..))))))))...))))).(((((...)))))..............))))..... (-18.60 = -18.67 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:05 2006