Locus 383

Sequence ID 3R_DroMel_CAF1
Location 1,455,016 – 1,455,136
Length 120
Max. P 0.577032
window636

overview

Window 6

Location 1,455,016 – 1,455,136
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -19.40
Consensus MFE -17.80
Energy contribution -17.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.92
SVM decision value 0.09
SVM RNA-class probability 0.577032
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1455016 120 + 27905053
AAAAUCCUUAAAGAGCGCCAGGAAAGAGCAGAGUUUGAAAGGAAUGUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAGCGGGAAGAAUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU
..........((((((.((.....((((((...(((....))).)))))).......((((...(((...........)))......(((....))).....)))).)).)))))).... ( -20.80)
>DroSec_CAF1 27433 120 + 1
AAAAUCCUUAAAGAGCGCCAGGAAAGAGAAGAGUUUGAAAGAAAUAUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAACGGGAAGAGUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU
..........((((((.((.((.....(((...((..(((......)))..))....)))....)).....................(((....)))..........)).)))))).... ( -18.70)
>DroSim_CAF1 25716 120 + 1
AAAAUCCUUAAAGAGCGCCAGGAAAGAGAAGAGUUUGAAAGAAAUAUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAACGGGAAGAGUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU
..........((((((.((.((.....(((...((..(((......)))..))....)))....)).....................(((....)))..........)).)))))).... ( -18.70)
>consensus
AAAAUCCUUAAAGAGCGCCAGGAAAGAGAAGAGUUUGAAAGAAAUAUUUUGGAAAAAUUUGAAGCCGAACAAAGAAAACGGGAAGAGUUCGAAAGAAAUAGACAAGAGGAGCUUUUGAUU
..........((((((.((..............((..(((......)))..))....((((...(((...........)))......(((....))).....)))).)).)))))).... (-17.80 = -17.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:56 2006