| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,435,371 – 10,435,474 |
| Length | 103 |
| Max. P | 0.993195 |
| Location | 10,435,371 – 10,435,474 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 64.50 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -16.76 |
| Energy contribution | -17.28 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.55 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10435371 103 - 27905053 -------------UAAAUAAUUUGUUGCAGCGGAAAAUGGAAACGUUUUUCUCUGUG--GCCA-AAGAAAAUUUGUUCCGCUUUUUUGCGUCGCAGUUUCGCUUAAUUAACAA-AGUCGA -------------.......(((((((.(((((((((((....)))))))).(((((--((((-(((((............))))))).)))))))....)))....))))))-)..... ( -29.20) >DroVir_CAF1 122869 100 - 1 ---------GCACUAAAUG-UUUGUUUAGGCGUGAAUUGUGAAU-----UUUGUAUG--GAAAGAA-AGUUGUUGUGGCGCACUUUUGCGUCGCAUUUACGCUUAAUUAACAG-AGUCG- ---------(.(((...((-((...(((((((((((.....(((-----(((.(...--...).))-))))..(((((((((....))))))))))))))))))))..)))).-)))).- ( -31.10) >DroGri_CAF1 174793 110 - 1 CUACGGCAAA--UUUGAUG-UUUAUUUGGGCGUAAAU-AUUAAU-----UUUGGCUGAGUGCACAACAAAAUUUGUGGCGCACUUUUGCGUCGCAGUUGCGCUUAAUUAACAGAAGUCG- ....(.((((--.((((((-(((((......))))))-))))).-----)))).)((((((((.........((((((((((....)))))))))).))))))))..............- ( -33.30) >DroEre_CAF1 95801 103 - 1 -------------UGAAUACUUUCUUGCAGCGGAAAAUGGAAACGUUUUUCACUUCG--GUGA-AAGGAAAUUCGUUCCGCUAUUUUGCGUCGCAGUUUCGCUUAAUUAACAA-AGUCGA -------------......((((((((.((.((((((((....)))))))).)).))--).))-)))((((((.((..(((......)))..))))))))((((........)-)))... ( -28.30) >DroMoj_CAF1 135549 109 - 1 CUAUAACAGACGUUGAGUA-UUUACUUGGGCGUAAAUUAUGCAU-----UUUAUGUG--GGCACAA-AUAUGUUGUGGCGCACGCUUGCGUCGCAGUUGCGCUUAAUUAACAG-AGUCG- ........(((.(((....-.(((.((((((((((.....((((-----....(((.--...))).-..))))(((((((((....))))))))).)))))))))).))))))-.))).- ( -29.70) >consensus _____________UAAAUA_UUUAUUUCGGCGUAAAUUGUAAAU_____UUUCUGUG__GGCA_AA_AAAAUUUGUGGCGCACUUUUGCGUCGCAGUUGCGCUUAAUUAACAG_AGUCG_ .....................(((.((((((((((...(....)............................(((((((((......))))))))))))))))))).))).......... (-16.76 = -17.28 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:03 2006