| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,394,234 – 10,394,345 |
| Length | 111 |
| Max. P | 0.634538 |
| Location | 10,394,234 – 10,394,345 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.54 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -20.57 |
| Energy contribution | -22.63 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10394234 111 - 27905053 -UAAUUGAUUUUACUCCAAUUGAAGGGCACUUAAUGUAACCUCUGUGACGGGUCAGGUCGUAGCUGGAAGACUCAACACCUACGAGGUGCAGCUGGACAAUGGAUCCGAGAU -............(((((...((.((..((.....))..))))..))..(((((..(((.((((((((....))..((((.....)))))))))))))....)))))))).. ( -31.30) >DroVir_CAF1 71440 106 - 1 UUGUUUGCUUU--UGUU----AUAGGGCCACAAAAGUGCUGAAGGUGACAACUCAAGUUGUUGCCGGCACUCUGGACACCUACACCGUGGAGCUGACCAGCGAUAAUGUGGC ...........--....----.....((((((..((((((...((..(((((....)))))..))))))))((((.(((((((...)))).).)).))))......)))))) ( -34.70) >DroSec_CAF1 58583 107 - 1 -UGAUUGAUUUAAUUCC----GAAGGGCACUUAAUGUGACCUCUGUGACGGGUCAGGUCGUAGCUGGAAGCCUCAACACCUACGAGGUUCAGCUGGACAAUGGAUCCGAGAU -.............(((----(.(((.(((.....))).))).)).))((((((..(((.(((((((..(((((.........)))))))))))))))....)))))).... ( -36.00) >DroSim_CAF1 44920 107 - 1 -UGAUUGAUUUAAUUCC----GAAGGGCACUUAAUGUGACCUCUGUGACGGGUCAGGUCGUAGCUGGAAGCCUCAACACCUACGAGGUUCAGCUGGACAAUGGAUCCGAGAU -.............(((----(.(((.(((.....))).))).)).))((((((..(((.(((((((..(((((.........)))))))))))))))....)))))).... ( -36.00) >DroEre_CAF1 54140 111 - 1 -UGUUUGAUUUGGUUCCGAUUUCAGGGCACUUAAUGUGACCUCUGUGACGGGUCAGGUCGUAGCUGGAACACUCUACACCUACGAGGUCCAGCUGGAUAAUGGAUCCGAGCA -...........((((......((((((((.....))).)).)))....(((((..(((.((((((((...(((.........))).)))))))))))....))))))))). ( -37.60) >DroYak_CAF1 54413 111 - 1 -UGAUUGCUCUUGUUCCGAUUUCAGGGCACUUAAUGUGACCUCUGUGACGGGUCAGGUCGUAGCUGGAACACUCAACACCUUCGAGGUCCAGCUGGAUAAUGGAUCUGAGCA -....((((((((..(((.((.((((((((.....))).)).))).)))))..)))(((.((((((((...(((.........))).))))))))))).........))))) ( -39.00) >consensus _UGAUUGAUUUAAUUCC____GAAGGGCACUUAAUGUGACCUCUGUGACGGGUCAGGUCGUAGCUGGAACACUCAACACCUACGAGGUCCAGCUGGACAAUGGAUCCGAGAU .......................(((.(((.....))).)))......((((((..(((.((((((((...(((.........))).)))))))))))....)))))).... (-20.57 = -22.63 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:51 2006