Locus 3820

Sequence ID 3R_DroMel_CAF1
Location 10,371,506 – 10,371,599
Length 93
Max. P 0.642357
window6119

overview

Window 9

Location 10,371,506 – 10,371,599
Length 93
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.86
Mean single sequence MFE -24.10
Consensus MFE -12.86
Energy contribution -14.00
Covariance contribution 1.14
Combinations/Pair 1.15
Mean z-score -2.24
Structure conservation index 0.53
SVM decision value 0.23
SVM RNA-class probability 0.642357
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10371506 93 + 27905053
AGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGGAAUUUGUGCCAAAAGCGCGCUUACAAAGUUUGGCAAAUAAAU-UGUCA-AAUGC------CUC
..........(((((((((.((((((((.......(((....(((((.....))))))))......)))))))).....)-)))))-)))..------... ( -21.52)
>DroVir_CAF1 48697 87 + 1
GUCCAAAUUUGUUUGAGACAUUGCCA-AACAUCAAAGCAAUUUGUGCCUAG------CAAAGUAAACGAGCAAAAUAAAU-UGCCAAAAUGU------CAC
.......((((((((..((.((((..-..((.((((....))))))....)------))).))...))))))))......-...........------... ( -15.00)
>DroPse_CAF1 34799 92 + 1
GGCCAAAUUUGUUUGACGAAUUGCCAAAACAUCCGAGCAAUUUGUGCCCCGAGCGCG--AGCGAAGUUUGGCAAAUAAAUUUGCCA-AAUGU------CAC
(((((((....))))((((((((((.........).))))))))))))....((...--.))((.((((((((((....)))))))-))).)------).. ( -30.20)
>DroEre_CAF1 30712 93 + 1
GGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGCAAUUUGUGCCAAAAACGCGCUUACAAAGUUUGGCAAAUAAAU-UGUCA-AAUGC------CUC
(((....(((((..(((((((((((.(.....).).)))))))))((.......)).)..)))))(((((((((.....)-)))))-)))))------).. ( -23.60)
>DroYak_CAF1 31114 99 + 1
GGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGCAAUUUGUGCCAAAAACGCGCUUACAAACUUUGGCAAAUAAAU-UGUCA-AAUGCUGCAUGCUC
(((..((((((.....))))))))).........(((((....((((.......))))........((((((((.....)-)))))-)).......))))) ( -22.50)
>DroPer_CAF1 31603 92 + 1
GGCCAAAUUUGUUUGACGAAUUGCCAAAACAUCUGAGCAAUUUGUGCCCCGAGCGCG--AGCGAAGUUUGGCAAAUAAAUUUGCCA-AAUGU------CAC
(((((((....))))(((((((((((.......)).))))))))))))....((...--.))((.((((((((((....)))))))-))).)------).. ( -31.80)
>consensus
GGCCAAAUUUGUUUGACGAAUUGCCAGAACAUCAGAGCAAUUUGUGCCAAAAGCGCGCUAACAAAGUUUGGCAAAUAAAU_UGCCA_AAUGC______CAC
.(((((((((.....(((((((((............)))))))))((.......)).......)))))))))............................. (-12.86 = -14.00 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:50 2006