Locus 382

Sequence ID 3R_DroMel_CAF1
Location 1,454,286 – 1,454,406
Length 120
Max. P 0.966234
window635

overview

Window 5

Location 1,454,286 – 1,454,406
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -48.46
Consensus MFE -41.52
Energy contribution -42.28
Covariance contribution 0.76
Combinations/Pair 1.22
Mean z-score -1.88
Structure conservation index 0.86
SVM decision value 1.59
SVM RNA-class probability 0.966234
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1454286 120 + 27905053
GCAGCUCAGGGAGCAGGACCGGGAACGGCAGAGGACUCUGCUGGCCGAGCAGCAUAGGCUGGACAGGCAAAGUCUGAAAAGGGCGCGUCAACUGCGUGACCGACGUUUGCGGGAGCAGCA
((.((((.(.((((.((((......(((((((....)))))))(((...((((....))))....)))...)))).....((.(((((.....))))).))...)))).)..)))).)). ( -47.00)
>DroSec_CAF1 26603 120 + 1
GCAGCUCAGGGAGCAGGACCGGAAGCGGCAGAGGACUCUGUUGGCCGAGCAGCAGAGGCUGGACAGGCAGAGUCUGGAAAAGGCGCGUCAAGUGCGCGACCGACGCUUGCGGGAACAGCA
((.((((...))))....(((.(((((.....((((((((((..((.(((.......)))))...))))))))))......(((((((.....))))).))..))))).))).....)). ( -51.60)
>DroSim_CAF1 24887 120 + 1
GCAGCUCAGGGAGCAGGACCGGAAGCGGCAGAGGACUUUGCUGGCCGAGCAGCAGAGGCUGGACAGGCAGAGUCUGGAAAAGGCGCGUCAAGUGCGCGACCGACGCUUGCGGGAACAGCA
((.((((...))))....(((.(((((.....((((((((((..((.(((.......)))))...))))))))))......(((((((.....))))).))..))))).))).....)). ( -51.50)
>DroEre_CAF1 28340 120 + 1
GCAGCUCAGGGAGCAGGAACGAGAGCGGCAGAGGACUCUGCAGGCCGAGCAGCAGAUGCUGGAAAGGCAGGGUCUGGAAAAGGCGCGUCAACUGCGCGACCGACGAUUGCGGGAGCAGCA
((.((((.....((((....((..(((.(...(((((((((...((.((((.....))))))....)))))))))......).))).))..))))....(((.......))))))).)). ( -46.80)
>DroYak_CAF1 26765 120 + 1
GCAGCUCAGGGAGCAGGAGCGAGAACGUCAGAGGACUCUGCUGGCCAAAGAGCAGAUGCUGGAAAAGCAGCGCCUGGAAAAGGCGCGUCAACUACGCGACCGACGAUUGCGGGAGCAGCA
((.((((.....((((..(((....(((.((..(((((((((........))))))((((.....))))((((((.....)))))))))..)))))....)).)..))))..)))).)). ( -45.40)
>consensus
GCAGCUCAGGGAGCAGGACCGGGAGCGGCAGAGGACUCUGCUGGCCGAGCAGCAGAGGCUGGACAGGCAGAGUCUGGAAAAGGCGCGUCAACUGCGCGACCGACGAUUGCGGGAGCAGCA
((.((((...))))....(((.(((((.....((((((((((..((.(((.......)))))...))))))))))......(((((((.....))))).))..))))).))).....)). (-41.52 = -42.28 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:54 2006