Locus 3818

Sequence ID 3R_DroMel_CAF1
Location 10,370,932 – 10,371,035
Length 103
Max. P 0.684297
window6116

overview

Window 6

Location 10,370,932 – 10,371,035
Length 103
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.15
Mean single sequence MFE -26.73
Consensus MFE -17.15
Energy contribution -18.37
Covariance contribution 1.22
Combinations/Pair 1.17
Mean z-score -1.80
Structure conservation index 0.64
SVM decision value 0.31
SVM RNA-class probability 0.684297
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10370932 103 + 27905053
ACACAGA---CAUGCAGGCAAACAGACCAAAUCGAUACGAAGGAGGCUGUCAAGUCUGCACCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG
.......---..(((((((..((((.((...(((...)))....))))))...)))))))..............(((((((((.(((....)))..))))))))). ( -28.40)
>DroSec_CAF1 34840 103 + 1
ACACAAA---CAUGCAGGCAAACAGACCAAAUCGAUACAGAAGAGGCUGUCAAGCCAGCACCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG
.......---..(((.(((..((((.((...((......))...))))))...))).)))..............(((((((((.(((....)))..))))))))). ( -26.60)
>DroSim_CAF1 29748 103 + 1
ACACAAA---CAUGCAGGCAAACAGACCAAAUCGAUACGGAGGAGGCUGUCAAGCCAGCUCCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG
.......---......((........))..........((((..((((....))))..))))............(((((((((.(((....)))..))))))))). ( -26.50)
>DroEre_CAF1 30119 103 + 1
ACACAAA---CAUGCAGGCAAACAGACCAAAUCGAUACGUAGGUGGCUGUCAGGUCUGCUCCGACCCACUCUAAAUCAUCGUUGCGGAUAACCAAGGAUGAUGAUA
.......---...((((((..((((.(((...((...))....)))))))...))))))...............((((((.(((.(.....)))).)))))).... ( -27.30)
>DroYak_CAF1 30561 103 + 1
ACACAAA---CAUGCAGGCAAACCGACCAAAUCGAUACGAAGGAGGCUGUCAAGUCUGCUCCAACCCACUCUAAAUCAUCGUUGCGGAUAACCAAAGAUGAUGAUG
.......---...((((((....(((.....)))...(....)..........))))))...............(((((((((..((....))...))))))))). ( -21.50)
>DroPer_CAF1 30973 92 + 1
ACACAGAGCAGAUGUGGGCAGGCAAGCUGAAUCGAUGG--GAGAGGCAGGCACUCUUCCACCA------------ACGUCGUUGGGGAUAACCCCAGAUGAAGAUG
.((((.......))))(((......)))..((((.(((--(((((.......)))))))).).------------.((((..(((((....)))))))))..))). ( -30.10)
>consensus
ACACAAA___CAUGCAGGCAAACAGACCAAAUCGAUACGAAGGAGGCUGUCAAGCCUGCACCAACCCACUCUAAAUCAUCGUUGCGGAUAACCGAAGAUGAUGAUG
.............((((((..((((.((................))))))...))))))...............(((((((((..((....))...))))))))). (-17.15 = -18.37 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:48 2006