| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,367,805 – 10,367,896 |
| Length | 91 |
| Max. P | 0.995809 |
| Location | 10,367,805 – 10,367,896 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 68.42 |
| Mean single sequence MFE | -24.65 |
| Consensus MFE | -12.62 |
| Energy contribution | -14.34 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.51 |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.995809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10367805 91 + 27905053 ACAAAUGUGCGUUGGCAA--CAGUGCGUAUGAGCAUUGUGUCAACUAUUUGUGCACUUGAAGA--AAUCUAUUUUGCUUAUAUGACGAACACAUU ...((((((.(((((((.--((((((......)))))))))))))..(((((.((..(((.((--((....))))..)))..))))))))))))) ( -25.50) >DroSec_CAF1 31731 78 + 1 ACAAAUGUGCGUUGGCAA--CAGUGCGUAUGAGCAUUGUGUCAACUAUUUGUGCACUUGGAGA--AAUCUAUU-------------GUGGUCAUA (((((((...(((((((.--((((((......)))))))))))))))))))).(((.((((..--..))))..-------------)))...... ( -27.60) >DroSim_CAF1 26621 80 + 1 ACAAAUGUGCGUUGGCAA--CAGUGCGUAUGAGCAUUGUGUCAACUAUUUGUGCACUUGAAGA--AAAAUAUG-----------ACGAGCACAUG ....(((((((((((((.--((((((......)))))))))))))...((((.((..(.....--...)..))-----------)))))))))). ( -26.80) >DroEre_CAF1 26582 91 + 1 ACAAAUGUGCGUUGGCAA--CAGUGCGUAUGAGCAUUGUGUCAACUAUUCGUGCACUUGGCGA--AAUCUAUUUUGGUCAUAUGACGAGCACAGC .....((((((((((((.--((((((......)))))))))))))...((((.((..((((.(--((.....))).))))..))))))))))).. ( -36.50) >DroYak_CAF1 27394 80 + 1 AUAAAUGUGUGUUGGCAACACAGUGCGUAUGAGCAUUGUGUCAACUAUUUGUGCACUUGAAGA--AAUUUAUCUCCGUCAGA------------- ......(((..((((..(((((((((......)))))))))...)))...)..))).((((..--..))))...........------------- ( -18.80) >DroAna_CAF1 19104 74 + 1 GA---AGUGGCUUA--AA--AAUCGCGUAUACGCAUCGUGUCU-CUAGUUGGGCACUCGGGAACUAACAUAACUCUGACAGG------------- ..---(((..(((.--..--....(((....)))...((((((-......))))))..))).))).................------------- ( -12.70) >consensus ACAAAUGUGCGUUGGCAA__CAGUGCGUAUGAGCAUUGUGUCAACUAUUUGUGCACUUGAAGA__AAUCUAUUU__GUCA_A____GAGCACAU_ ......(((((((((((...((((((......))))))))))))).......))))....................................... (-12.62 = -14.34 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:47 2006