Locus 3816

Sequence ID 3R_DroMel_CAF1
Location 10,361,790 – 10,361,895
Length 105
Max. P 0.714475
window6114

overview

Window 4

Location 10,361,790 – 10,361,895
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 86.45
Mean single sequence MFE -37.48
Consensus MFE -25.06
Energy contribution -26.14
Covariance contribution 1.08
Combinations/Pair 1.12
Mean z-score -2.20
Structure conservation index 0.67
SVM decision value 0.38
SVM RNA-class probability 0.714475
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10361790 105 + 27905053
UUGGUGCCCAGGACUUCGUGGCCAUGGAUGGCCAUGGCAAAAUGGCCUCUUCAGGCCGUCGAACUGGGCGAGGACUUGGCCAAGUAUAAUCUCUCAGAGAAUUGU
(((((((((((...(((((((((.((((.((((((......))))))..))))))))).))))))))))((....)).)))))......((((...))))..... ( -42.20)
>DroSec_CAF1 20314 101 + 1
UCGGUGGCCAGGACUUCGUGG----AGAUGGCCAUGGCAAAAUGGCCACUUCAGGCCGUCGAACUGGGCGAGGACUUGGUCAAAUGUAAUCUCUCAGAGAAUUGU
(((..((((..(....).(((----((.(((((((......))))))))))))))))..))).(((((.((..((..........))..)).)))))........ ( -39.20)
>DroSim_CAF1 20473 101 + 1
UCGGUGGCCAGGACUUCGUGG----AGAUGGCCAUGGCAAAAUGGCCACUUCAGGCCGUCGAACUGGGCGAGGACUUGGUCAAAUGUAAUCUCUCAGAGAAUUGU
(((..((((..(....).(((----((.(((((((......))))))))))))))))..))).(((((.((..((..........))..)).)))))........ ( -39.20)
>DroEre_CAF1 20486 100 + 1
UUGGUGGGCAGGACUUUGUGG----AGAUGCCCAUGGAA-AAUGGGCACUUCAGGCCGUCGAACUGCGAGAGGUCUUGGCAAGAUACAAGCUCUUGGUGAAUAGU
.......(((((((..(.(((----((.(((((((....-.)))))))))))).)..)))...))))(((((..((((........))))))))).......... ( -33.30)
>DroYak_CAF1 21302 101 + 1
UUGGUGGCCAGGACUUGGUGG----AGAUGCCCAUGGAAAAAUGGCCACUUCAGGCCGUCGAACUGCGAGAGGUCUUGGCCAGAUAUAAGCUCUUAGAGAAUAGU
....(((((((((((((((((----((.((.((((......)))).))))))..))).(((.....))).))))))))))))........(((...)))...... ( -33.50)
>consensus
UUGGUGGCCAGGACUUCGUGG____AGAUGGCCAUGGCAAAAUGGCCACUUCAGGCCGUCGAACUGGGCGAGGACUUGGCCAAAUAUAAUCUCUCAGAGAAUUGU
....((((((((.((((((.........(((((((......)))))))...(((.........))).)))))).))))))))....................... (-25.06 = -26.14 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:46 2006