Locus 3814

Sequence ID 3R_DroMel_CAF1
Location 10,347,887 – 10,348,007
Length 120
Max. P 0.561293
window6112

overview

Window 2

Location 10,347,887 – 10,348,007
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -30.83
Consensus MFE -21.14
Energy contribution -23.22
Covariance contribution 2.08
Combinations/Pair 1.12
Mean z-score -1.97
Structure conservation index 0.69
SVM decision value 0.06
SVM RNA-class probability 0.561293
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10347887 120 - 27905053
UCCAUAUAGGUGAUAUCGCCUUUACGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUCGAUUCGGGAUCUGAAUCAGUCUUUGGCAAUGGAUUGACUUUUUUAUUAACCACCUGAAAA
......((((((.(((((......)))))((((.((((((((.(((((....)))))...(((((((...))))))).......))))))))))))..............)))))).... ( -34.80)
>DroSec_CAF1 6457 120 - 1
UCCAUAUAGGUGAUAUCGCCUUUGCGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUUAAUUCGGGAUCUGAAUCAGUCUUUGGCGAUGGAUUGACUUUUUUAUUAACCACCUGAGGA
(((...((((((.((((((....))))))((((.((((((((.(((((....)))))....((((((...))))))........))))))))))))..............)))))).))) ( -34.10)
>DroSim_CAF1 6479 120 - 1
UCCAUAUAGGUGAUAUCGCCUUUGCGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUCAAUUCGGGAUCUGAAUCAGUCUUUGGCGAUGGAUUGACUUUUUUAUUAACCACCUGAGAA
......((((((.((((((....))))))((((.((((((((..((((((((....((((......)))).)).))))))....))))))))))))..............)))))).... ( -33.90)
>DroEre_CAF1 6508 120 - 1
UCCAUAUAGGAUAUAUCGCCCUUGCGGUACAGUUCCAUUGCCCGAUUUAUCACAAUAUUCAUUUCCGGAUCUGAAUCUCUCUCUGGCGACAGGUCGACCUUUUUACUAACCACCUGGGCA
........(((..((((((....))))))....)))..(((((((((((.......((((......)))).)))))).......(((((....))).))................))))) ( -24.30)
>DroYak_CAF1 6851 118 - 1
UCCAUAUAGGAAAUAUCGCCCUUGCGGUAAAGUUCCAUUGCCCGAUUUAUCACAAUGUUCAUUUCGGGAUCUGAAUCACUCUCUGGCGAAAGGGUGACCUUUUUAUUAACCACCUGA--A
.(((....((((.((((((....))))))...))))....(((((..................)))))...............))).((((((....))))))..............--. ( -27.07)
>consensus
UCCAUAUAGGUGAUAUCGCCUUUGCGGUACAGUUCCAUUGCCCUAUUGAUCACAAUGUUCAAUUCGGGAUCUGAAUCAGUCUUUGGCGAUGGAUUGACUUUUUUAUUAACCACCUGAGAA
......((((((.((((((....))))))....(((((((((..((((((((....((((......)))).)).))))))....))))))))).................)))))).... (-21.14 = -23.22 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:44 2006