Locus 3812

Sequence ID 3R_DroMel_CAF1
Location 10,346,867 – 10,346,986
Length 119
Max. P 0.609238
window6110

overview

Window 0

Location 10,346,867 – 10,346,986
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 92.77
Mean single sequence MFE -31.24
Consensus MFE -24.50
Energy contribution -25.10
Covariance contribution 0.60
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.78
SVM decision value 0.15
SVM RNA-class probability 0.609238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10346867 119 + 27905053
GGAUUUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUCCUGAUGCUAAAGAUUCCCGGACCCAUAGGACUACCCAUUUUGGGUAGCUCCCUGGAAAAUAUCAUCACCUAUAAACGUAAA
(((..(((..(((.(((.....))).)))..)))..)))(((((.((....((((.((.((....)).((((((.....))))))...)).))))..)).))))).............. ( -29.30)
>DroSec_CAF1 5435 119 + 1
GGAUAUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUGCUGAUGCUAAGGAUUCCCGGACCCAUAGGACUACCCAUUUUGGGUAGUUCCCUGGAAAAUAUUAUCACCUAUAAACGUAAA
.((((..((((((((((.(((((....(((.......)))...))...((....)).))))))))(((((((((.....)))))))))...)))))....))))............... ( -31.40)
>DroSim_CAF1 5453 119 + 1
GGAUAUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUGCUGAUGCUAAGGAUUCCUGGACCCAUAGGACUACCCAUUCUGGGUAGUUCCCUGGAAAAUAUCAUCACCUAUAAACGUAAA
.(((((.((((((((((.(((.....(((.....((.((....)).)).....))).))))))))(((((((((.....)))))))))...)))))))))).................. ( -33.00)
>DroEre_CAF1 5513 119 + 1
GGAUAUAUUUCUUAUGGAGCCGCCGAAGGCUAUAUUUGCUCAUGCUAAGGAUACCCGGACCCAUAGGGCUACCCAUUCUUGGCAGUUCCUUGGAAAAUAUCAUCACCUAUAAACGUAAA
.(((((.(((((...(((((.(((...)))............((((((((((....((.(((...)))))....)))))))))))))))..)))))))))).................. ( -32.10)
>DroYak_CAF1 5865 119 + 1
GGAUAUAUUUCUUAUGGAGUCGCCGAAGGCUGUAUUUGCUAAUGCUAAGGAUGCCCGGACCCAUAGGGCUGCCCAUUCUUGGUAGUUCCCUCGAAAAUAUCAUCACCUAUAAACGUAAA
.(((((.((((.(((((.((((((...))).((((((((....))...))))))...))))))))((((((((.......))))))))....))))))))).................. ( -30.40)
>consensus
GGAUAUAUUUCUUAUGGAGUCGCCGAAGGUUAUAUUUGCUGAUGCUAAGGAUUCCCGGACCCAUAGGACUACCCAUUCUGGGUAGUUCCCUGGAAAAUAUCAUCACCUAUAAACGUAAA
.(((((.((((.(((((.(((((....(((.......)))...))...((....)).))))))))(((((((((.....)))))).)))...))))))))).................. (-24.50 = -25.10 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:42 2006