Locus 3811

Sequence ID 3R_DroMel_CAF1
Location 10,343,924 – 10,344,044
Length 120
Max. P 0.535237
window6109

overview

Window 9

Location 10,343,924 – 10,344,044
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.44
Mean single sequence MFE -42.53
Consensus MFE -34.08
Energy contribution -34.17
Covariance contribution 0.09
Combinations/Pair 1.15
Mean z-score -1.99
Structure conservation index 0.80
SVM decision value 0.00
SVM RNA-class probability 0.535237
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10343924 120 - 27905053
CUUCACCGAUUCGGAUGCCUCUAUUUUCGAGGCAUUUGCCAUUUUCUGUGGCUUGGGCAUUCACAACACCCAGAUGUACGAGAAUGCCUGCAAGUUGAUGGCCAAGCAGAAGGUGGCCCU
............(((((((((.......)))))))))(((((((((((((((((((((((((.(.(((......)))..).))))))))).........))))..))))))))))))... ( -44.60)
>DroVir_CAF1 6668 120 - 1
CUUCACCGAAUCGGAUGCCUCCAUAUUUGAGGCGUUCGCCAUAUUCUGCGGACUUGGCAUACACAACACACAGAUGUAUGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCGCU
............(((((((((.......)))))))))(((((.((((((((......(((((((........).))))))......)).....((.....))...)))))).)))))... ( -40.40)
>DroGri_CAF1 8879 120 - 1
CUUCUCCGAAUCGGAUGUGUCGAUAUUCGAGGCAUUUGCCAUAUUCUGUGGCCUGGGCAUCCACAACACGCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCGCU
............((((((.(((.....))).))))))(((((.(((((((((((((....)))......((((.(((......))).))))........))))..)))))).)))))... ( -41.50)
>DroWil_CAF1 6539 120 - 1
GUUUACCGAAUCGGAUGCCUCGAUUUUUGAGGCUUUUGCCAUAUUCUGCGGCCUGGGCAUACACAAUACUCAAAUGUAUGAGAAUGCCUGCAAAUUGAUGGCCAAGCAGAAGGUGGCCCU
.....(((...)))..(((((((...)))))))....(((((.((((((((((.((((((.(...((((......))))..).)))))).(.....)..))))..)))))).)))))... ( -42.60)
>DroMoj_CAF1 2556 120 - 1
CUUUACCGAAUCGGAUGCAUCCAUAUUCGAGGCAUUCGCCAUAUUCUGCGGCCUGGGCAUACACAACACGCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCAUU
............((((((.((.......)).))))))(((((.(((((((((((.(((.(....)....((((.(((......))).))))..))).).))))..)))))).)))))... ( -40.30)
>DroAna_CAF1 2844 120 - 1
CUUCACCGAGUCGGAUGCCUCGAUCUUUGAGGCCUUCGCCAUCUUCUGCGGGCUGGGCAUCCACAACACCCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCCCU
..(((((...(((((.(((((((...))))))).)))((((((..((((((((((((...........))))...((......)))))))).))..))))))......)).))))).... ( -45.80)
>consensus
CUUCACCGAAUCGGAUGCCUCGAUAUUCGAGGCAUUCGCCAUAUUCUGCGGCCUGGGCAUACACAACACCCAGAUGUACGAGAACGCCUGCAAGCUGAUGGCCAAGCAGAAGGUGGCCCU
............(((((((((.......)))))))))(((((.((((((....(((.(((.((.......(((.(((......))).))).....))))).))).)))))).)))))... (-34.08 = -34.17 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:40 2006