| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,332,416 – 10,332,521 |
| Length | 105 |
| Max. P | 0.557559 |
| Location | 10,332,416 – 10,332,521 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.29 |
| Mean single sequence MFE | -26.16 |
| Consensus MFE | -12.35 |
| Energy contribution | -13.97 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10332416 105 + 27905053 AAGAAAAACCUG-GCGCCAUAAUUCAGCAAAUGGCCAACACACUUGUGCAAUUUCAUAAAGCAUUUUAGCCCAGUGGCCACAAAAUAA-AAAGCGCAGUUGCCACAC ...........(-(((((((..........)))))..........((((...........))))....)))..(((((.((.......-........)).))))).. ( -19.96) >DroSim_CAF1 189452 106 + 1 AAGAAAAACCUGGGCGCCAUAAUUCAGCAAAUGGCCAACACACUUGUGCAAUUUCAUAAAGCAUUUUAGCCCAGUGGCCACAAAAUAA-AAAGCGCAGUUGCCACAC ..........((((((((((..........)))))..........((((...........))))....)))))(((((.((.......-........)).))))).. ( -24.96) >DroEre_CAF1 189631 101 + 1 -----AAACCUGGGCGCCAUAAUUCAGCAAAUGGCCAACACACUUGUGCAAUUUCAUAAAGCACUUCAGCCCAGUGGCCACAAAAUAA-AAAGCGCAGUUGCCACAC -----.....((((((((((..........)))))..........((((...........))))....)))))(((((.((.......-........)).))))).. ( -27.16) >DroYak_CAF1 199662 102 + 1 -----AAACCUGGGCGCCAUAAUUCAGCAAAUGGCCAACACACUUGUGCAAUUUCAUAAAGCAUUUUAGCCCAGUGGCCACAAAGUAAAAAAGCGCAGUUGCCACAC -----.....((((((((((..........)))))..........((((...........))))....)))))(((((.((...((......))...)).))))).. ( -27.10) >DroAna_CAF1 166266 99 + 1 CUGGAAAAGCUGAGCGCCAUAAUUCAGCAAUU-CCCAA--CACUUGUGCAAUUUCAUGAGGCACUGCAGCCCAGUGGCCAGUGGCCAC-A----ACAGUUGCCACAC ..((((..((((((........))))))..))-))...--....(((((((((...((.(((......)))))((((((...))))))-.----..))))).)))). ( -32.50) >DroPer_CAF1 209277 89 + 1 CCGG---GCCAGAGCGCAAUAAUUCAGCAAUU-UCCAA--CACUUGUGCAAUUUCAUAAAGCAUUUUUGCCCAGUGGCCCA------------GGCAGUUGCCACAC ..((---((((..((((((.............-.....--...))))))...........(((....)))....)))))).------------(((....))).... ( -25.30) >consensus __G__AAACCUGGGCGCCAUAAUUCAGCAAAUGGCCAACACACUUGUGCAAUUUCAUAAAGCAUUUUAGCCCAGUGGCCACAAAAUAA_AAAGCGCAGUUGCCACAC .........(((.((((.........))...((((((.....((.((((...........))))...)).....))))))............)).)))......... (-12.35 = -13.97 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:34 2006