| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,325,649 – 10,325,746 |
| Length | 97 |
| Max. P | 0.846753 |
| Location | 10,325,649 – 10,325,746 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.43 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -10.67 |
| Energy contribution | -10.70 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10325649 97 - 27905053 GGGCGGCAUUUGCCAAAAUCUUGCACAAAUCACAUAAAUCGCCGCUCAA-AUC-CAACUCCGUAUUUGGCCAAAAUGCCAA---------------------ACUCACGGCUAAUGCUCA ((((((((((((.(((....)))..)))))..........)))))))..-...-.....((((.((((((......)))))---------------------)...)))).......... ( -23.40) >DroGri_CAF1 200368 97 - 1 GCGCAACAUUUGCCAAAAUCUCUCACAAAUCACAUAAAUUGCCGCUUAA-AUC-CAGCGCCAUAUUUGGCUAAAAUGCCAA---------------------ACUCACGGCUAAUACUCA .......(((.(((.........................((.((((...-...-.)))).))..((((((......)))))---------------------).....))).)))..... ( -17.10) >DroWil_CAF1 205113 116 - 1 ---UUACAUUUGCCAAAAUCUUGCACAAAUCACAUAAAUCGCCGCACAAAAUC-CAGCACCAUAUUUGGCCAAAAUGCCAGCCAGCCAGCCUGCGAUCCAAGUCUCAUGGCUAAUACUCA ---...(((((((((((.....((................)).((........-..))......))))))..)))))..(((((...((.((........)).))..)))))........ ( -16.69) >DroMoj_CAF1 210475 97 - 1 GCACAACAUUUGCCAAAAUCUCGCACAAAUCACAUAAAUUGCCGCUCAA-AUC-CAGCGCCAUAUUUGGCUAAAAUGCCAA---------------------ACUCACGGCUAAUACUCA .......(((.(((.........................((.((((...-...-.)))).))..((((((......)))))---------------------).....))).)))..... ( -17.10) >DroAna_CAF1 161079 96 - 1 UCUCGCUAUUUGCCGAAAUCCCGCACAAAUCACAUAAAUCGCCGCUCGA-GUC-UGGCACCAUAUUUGGCUAAAAUGCCAA---------------------ACUCACGGCUAAUGCCG- ....((.(((.((((.......((...................))..((-((.-((((((((....)))......))))).---------------------)))).)))).)))))..- ( -22.91) >DroPer_CAF1 202369 98 - 1 GGGCAGCAUUUGACAAAAUCUUGCACAAAUCACAUACAUCGCCGCUCAA-AUCCCGGCACCAUAUUUGGCCAAAAUGCCAA---------------------ACUCACGGCUAAUGCUCA ((((((((...((.....)).)))................((((((...-.....)))......((((((......)))))---------------------).....)))...))))). ( -23.00) >consensus GCGCAACAUUUGCCAAAAUCUCGCACAAAUCACAUAAAUCGCCGCUCAA_AUC_CAGCACCAUAUUUGGCCAAAAUGCCAA_____________________ACUCACGGCUAAUACUCA ........................................((((((.........))).......(((((......)))))...........................)))......... (-10.67 = -10.70 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:29 2006