Locus 38

Sequence ID 3R_DroMel_CAF1
Location 295,520 – 295,617
Length 97
Max. P 0.986351
window62

overview

Window 2

Location 295,520 – 295,617
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.25
Mean single sequence MFE -31.58
Consensus MFE -28.36
Energy contribution -29.40
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.90
SVM decision value 2.04
SVM RNA-class probability 0.986351
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 295520 97 - 27905053
AAAGCGUGCCACUGACACACAGAGCGAACUACGAGCACC-ACUCACCGGUUGCGACAGCACCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAC
...((.(((((.((...(.(((((((......(((....-.)))..((((.((....)))))).......))))..))).).)).)))))))...... ( -29.40)
>DroSec_CAF1 30867 97 - 1
AAAGCGUGCCACUGACCCACACAGCGAACUACGAGCACC-ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAU
...((.(((((.((.((((..(((((......(((....-.)))....(((((....)))))........)))))..)).)))).)))))))...... ( -34.50)
>DroSim_CAF1 32578 97 - 1
AAAGCGUGCCACUGACCCACACAGCGAACUACGAGCACC-ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAU
...((.(((((.((.((((..(((((......(((....-.)))....(((((....)))))........)))))..)).)))).)))))))...... ( -34.50)
>DroEre_CAF1 33222 97 - 1
AAAGCGUGCCACUGACCCACACAGCGAACUACGAACAUC-ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGACUGAGGUAACGGCAGCGACAAU
...((.((((....(((((..(((((......((.....-..))....(((((....)))))........)))))..)).)))...))))))...... ( -27.70)
>DroYak_CAF1 35088 98 - 1
AAAGCGUGCCACUGACCCACACAGCGAACUACGAACGCCAACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGGCAAU
...((.(((((.((.((((..(((((......((........))....(((((....)))))........)))))..)).)))).)))))))...... ( -31.80)
>consensus
AAAGCGUGCCACUGACCCACACAGCGAACUACGAGCACC_ACUCACCGGUUGCGACAGCAGCGAAUUUCACGCUGGCUGAGGCAAUGGCAGCGACCAU
...((.(((((.((.((((..(((((......(((......)))....(((((....)))))........)))))..)).)))).)))))))...... (-28.36 = -29.40 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:02 2006