Locus 3799

Sequence ID 3R_DroMel_CAF1
Location 10,318,513 – 10,318,620
Length 107
Max. P 0.697692
window6093

overview

Window 3

Location 10,318,513 – 10,318,620
Length 107
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 93.66
Mean single sequence MFE -32.30
Consensus MFE -27.38
Energy contribution -27.26
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.37
Structure conservation index 0.85
SVM decision value 0.34
SVM RNA-class probability 0.697692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10318513 107 + 27905053
--UAGUCUUCUUUUUUUCUCUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU
--..(((..((((.........(((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..)))......... ( -26.80)
>DroSec_CAF1 175376 106 + 1
--CAGUCUUCUUUU-UUUUAUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU
--..(((..((((.-.......(((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..)))......... ( -26.90)
>DroSim_CAF1 175859 106 + 1
--GAGGCUUCUUUU-UUCUCUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU
--((((((.((..(-((((....((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..)).)))).)).. ( -31.50)
>DroEre_CAF1 175564 106 + 1
--UGGCCCCCUUUU-UUCUCGGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGCCAUCAU
--((((..((...(-((((....((((..(((((((.((...((....(((((((.......)))))))..)).)).)))))))..)))))))))..))..)))).... ( -32.40)
>DroYak_CAF1 185206 108 + 1
GAUGGCCUGCUUUU-UUCUCGGUGCACCAGGGGUUGGGCAAUCGAGCUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGCCAUCAU
((((((.((((..(-((((....((((..(((((((.((......((.(((((((.......))))))).))..)).)))))))..)))))))))..)))))))))).. ( -43.90)
>consensus
__UAGCCUUCUUUU_UUCUCUGUGCACCAGGGGUUGGGCAAUCGAGUUCAAUUUAAAAUAAAUGAGUUGUGCGCGUGCAAUUCCGAGUGCAGAAGUUGGCAGUCAUCAU
....(((..((((.........(((((..(((((((.((......((.(((((((.......))))))).))..)).)))))))..)))))))))..)))......... (-27.38 = -27.26 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:25 2006