Locus 3797

Sequence ID 3R_DroMel_CAF1
Location 10,316,084 – 10,316,193
Length 109
Max. P 0.958728
window6091

overview

Window 1

Location 10,316,084 – 10,316,193
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.96
Mean single sequence MFE -34.94
Consensus MFE -23.32
Energy contribution -23.35
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -3.36
Structure conservation index 0.67
SVM decision value 1.49
SVM RNA-class probability 0.958728
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10316084 109 - 27905053
CCCCAAGCCCCGACU-GUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGAGUGUACAGUUGGAUGUGUUUAGCCUUUUAUGUCGUCCAUCG----------
..........((((.-..(((..((((...((((((((((((((((...(((.........)))...))))))))))))))))..)))).)))......)))).......---------- ( -34.20)
>DroPse_CAF1 188616 111 - 1
-----G-AGCCGACUCUUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCGGGCUCAGUCGAGAG
-----(-(((((((....(((..((((...(((((((((((((.((...(((.........)))...)).)))))))))))))..)))).)))......)---)).)))))......... ( -36.80)
>DroEre_CAF1 172700 91 - 1
----------------GUGGCGCAAAUUUGAUCCAAUUGUGCACUCACUUAAUCGUGAUCUUUAUGCGAGUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCCAUCG----------
----------------..(((..((((...((((((((((((((((.(.(((.........))).).))))))))))))))))..)))).))).......---.......---------- ( -31.30)
>DroWil_CAF1 193806 106 - 1
-----G-ACUUGGCUUUUGGUGCAAAUUUGAUCCAAUUGUGCAUUCAUUUAAUCGUGAUCUUUAUGAGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCGAGUCCA-----CAU
-----(-(((((((....(((..((((...(((((((((((((.((......((((((...)))))))).)))))))))))))..)))).)))......)---)))))))..-----... ( -34.80)
>DroAna_CAF1 153184 98 - 1
--------UGCGGCU-UUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGAGUGUACAGUUGGAUGUGCUUAGCCUUUUGUG---UCCAUCG----------
--------...((((-..((((((.......(((((((((((((((...(((.........)))...))))))))))))))))))))).)))).......---.......---------- ( -35.71)
>DroPer_CAF1 192023 111 - 1
-----G-AGCCGACUCUUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG---UCGGGCUCAGUCGAGAG
-----(-(((((((....(((..((((...(((((((((((((.((...(((.........)))...)).)))))))))))))..)))).)))......)---)).)))))......... ( -36.80)
>consensus
_____G_ACCCGACU_UUGGCGCAAAUUUGAUCCAAUUGUGCACUCAUUUAAUCGUGAUCUUUAUGCGACUGUACAGUUGGAUGUGUUUAGCCUUUUAUG___UCCAGCG__________
..................(((..((((...(((((((((((((.((...(((.........)))...)).)))))))))))))..)))).)))........................... (-23.32 = -23.35 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:23 2006