Locus 3795

Sequence ID 3R_DroMel_CAF1
Location 10,310,416 – 10,310,519
Length 103
Max. P 0.852212
window6089

overview

Window 9

Location 10,310,416 – 10,310,519
Length 103
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.16
Mean single sequence MFE -32.87
Consensus MFE -22.34
Energy contribution -22.40
Covariance contribution 0.06
Combinations/Pair 1.19
Mean z-score -1.60
Structure conservation index 0.68
SVM decision value 0.79
SVM RNA-class probability 0.852212
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10310416 103 - 27905053
CCGGCUCUGGGGUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGU-------------UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU
..((((....))))..(((((((..(((.((((((..(((((.......))))-------------)...))))))(((.(((((.......))))).))).)))))))))).... ( -36.20)
>DroPse_CAF1 182942 110 - 1
------CCUCUCUCCCUCUCUUUGGGCCAAAACAAACAGCACUUAAAAUGUGUAUUCGUGUGUGUGUUUCUUGUUUGCCUGCAAAGUAACAAGUGGCUGGCAGGCGGAAGUGGACU
------((.((..(((.......)))((.((((((..(((((.....(((......)))....)))))..))))))((((((..(((........))).)))))))).)).))... ( -29.80)
>DroEre_CAF1 167065 103 - 1
UAGACCCCGCUCUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGU-------------UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU
................(((((((..(((.((((((..(((((.......))))-------------)...))))))(((.(((((.......))))).))).)))))))))).... ( -32.90)
>DroYak_CAF1 177060 103 - 1
UCGACGCUGGUCUCCCCGCUCCGCGGUCAAAACAAACAGCACUUAAAAUGUGU-------------UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU
..(((....)))....((((((((.....((((((..(((((.......))))-------------)...))))))(((.(((((.......))))).)))..)))).)))).... ( -34.70)
>DroAna_CAF1 148765 93 - 1
---------GUUUUCUGACUUCCCGGUCAAAACAAACAGCACUUA-AAUGAGU-------------UUUCUUGUUUGCCCGCCAUGUAACACGUGGCUGGCAGGCGGAAGUGGAAU
---------...((((.((((((.................((((.-...))))-------------......(((((((.((((((.....)))))).))))))))))))))))). ( -32.30)
>DroPer_CAF1 186216 110 - 1
------CCUCUCUCCCUCUCUUUGGGCCAAAACAAACAGCACUUAAAAUGUGUAUGCGUGUGUGUGUUUCUUGUUUGCCUGCAAAGUAACAAGUGGCUGGCAGGCGGAAGUGGACU
------((.((..(((.......)))((.((((((..(((((.....((((....))))....)))))..))))))((((((..(((........))).)))))))).)).))... ( -31.30)
>consensus
______CCGCUCUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGU_____________UUUCUUGUUUGCCCGCCAUGUAACAAGUGGCUGGCAGGCGGAAGUGAACU
...............(((.....)))(((.........((((.......)))).............(((((.(((((((.(((((.......))))).)))))))))))))))... (-22.34 = -22.40 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:21 2006