| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,302,560 – 10,302,662 |
| Length | 102 |
| Max. P | 0.684007 |
| Location | 10,302,560 – 10,302,662 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 81.97 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -16.79 |
| Energy contribution | -17.27 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10302560 102 - 27905053 UA----------GAAAAAAGCG--UCGGAAAAAACUGUCUUAAUGAUAGACAUUCACUUUUUAUGGC-CGCG-CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ..----------..........--(((((((...(((((.....)))))...(((((((((((.(((-((((-(...))))).))).))).)))))))).)))))))......... ( -26.00) >DroPse_CAF1 170200 103 - 1 AA----------AAAACAAGAG--CUAGUGAAAAAUUUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CACGCCGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ..----------....(((..(--((((.((......(((.......)))..((((((((....(((-(((((......))))))))....)))))))).)).)))))..)))... ( -26.70) >DroWil_CAF1 179062 92 - 1 CA----------GUAAC-AGC------------ACUCGGCAAAUGAUAGACAUUCACUUUUUAUGGAACGCG-CGAGGUGUGUGUAUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ((----------((.((-.((------------.....))......((((..((((((((...(((.(((((-(.....)))))).)))..))))))))...)))))).))))... ( -20.10) >DroYak_CAF1 168947 112 - 1 UAUAAAAACGUAGAAAAAAGCG--UUGGAAAAAAUUGUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CGCG-CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ......(((((........)))--))(((((....(((((.......)))))((((((((....(((-((((-(.....))))))))....)))))))).)))))........... ( -29.90) >DroAna_CAF1 142149 101 - 1 -------------GAAAAAGCGCCAUGGAACCAAUUGUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CGCG-CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC -------------........((((.((((.....(((((.......)))))((((((((....(((-((((-(.....))))))))....)))))))).))))))))........ ( -29.90) >DroPer_CAF1 173239 102 - 1 -A----------AAAACAAGAG--CCAGUGAAAAAUUUCUUAAUGAUAGACAUUCACUUUUUAUGGA-CACGCCGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUAGUAAUUGAGC -.----------..........--..............((((((..((((..((((((((....(((-(((((......))))))))....))))))))...))))...)))))). ( -27.00) >consensus _A__________GAAAAAAGCG__CUGGAAAAAAAUGUCUUAAUGAUAGACAUUCACUUUUUAUGGA_CGCG_CGAGGUGUGUGUCUUAAUGGAGUGAAAUUUCUGGUAAUUGAGC ......................................((((((..((((..((((((((....(((.((((........)))))))....))))))))...))))...)))))). (-16.79 = -17.27 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:19 2006