| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 10,285,578 – 10,285,671 |
| Length | 93 |
| Max. P | 0.552411 |
| Location | 10,285,578 – 10,285,671 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 77.37 |
| Mean single sequence MFE | -13.76 |
| Consensus MFE | -9.48 |
| Energy contribution | -9.76 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 10285578 93 + 27905053 AGGACUUG---GAAAAAAGACUUGUGGCCAAAAAAAAAAGAAAAUAAAAUAAAAAGAUUUGGAUACUGAAAAGCGGAAAUGGGUCGGUCAUUAGAU ..(((((.---...)...((((..(..((.................((((......)))).....((....)).))..)..))))))))....... ( -12.50) >DroSec_CAF1 142904 78 + 1 AGGACUUG---GAAAAUAAGCUUGUGGCCAAAAAA---------------AAAAAGAUUUGGAUACCGAAAAGCGGAAAUGGGUCGGUCAUUAGAU ..((((((---(...(((....)))..))).....---------------.....(((..(....(((.....)))...)..)))))))....... ( -12.30) >DroSim_CAF1 142516 84 + 1 AGGACUUGGUGGAAAAUAGACUUGUGGCCAAAAAAAAA------------AAAAAGAUUUGGAUACCGAAAAGCGGAAAUGGGUCGGUCAUUAGAU .....(((((((......((((..(..(((((......------------.......)))))...(((.....)))..)..))))..))))))).. ( -14.82) >DroEre_CAF1 143186 70 + 1 AGGACUGG---GGAAACAGACUUGUGGCCAAAAA-----------------------ACCGGAGACCGAGAAACGGAAAUGGGUCGGUCAUUAGAU ..((((..---(....).((((..(..((.....-----------------------...(....)........))..)..))))))))....... ( -17.29) >DroYak_CAF1 151620 80 + 1 AGGACUUG---GAGAAUAAACUUGUGGCCAAAAAAAAA------------U-AUAUAAUCAGAGGCCGAGAAACGGAAAUGGGUCGGUCAUUAGAU ..((((..---.............(((((.........------------.-...........))))).((..((....))..))))))....... ( -11.90) >consensus AGGACUUG___GAAAAUAGACUUGUGGCCAAAAAAAAA____________AAAAAGAUUUGGAUACCGAAAAGCGGAAAUGGGUCGGUCAUUAGAU ....................((.((((((..........................((((((....(((.....)))...)))))))))))).)).. ( -9.48 = -9.76 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:17 2006