Locus 3786

Sequence ID 3R_DroMel_CAF1
Location 10,267,131 – 10,267,224
Length 93
Max. P 0.994879
window6074 window6075

overview

Window 4

Location 10,267,131 – 10,267,224
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 81.40
Mean single sequence MFE -18.52
Consensus MFE -14.02
Energy contribution -14.02
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.76
SVM decision value 1.11
SVM RNA-class probability 0.916885
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10267131 93 + 27905053
AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCAUUCUGCACCACUCUGCACCACUUCUGUACAACUUCUACACCACCUC
.((.(((...((((((((((.(((((.............))))))))....(((......))))))))))..)))))................ ( -20.22)
>DroSec_CAF1 124716 72 + 1
AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCACUCUGCACCAC---------------------UUCUGCACCACCUC
............((((((((.(((((.............))))))))....(((....---------------------...))))))))... ( -16.82)
>DroSim_CAF1 123859 72 + 1
AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCACUCUGCACCAC---------------------UUCGGCACCACCUC
........((((((((((((.(((((.............))))))))......)))))---------------------)).))......... ( -18.52)
>consensus
AUGAUAUUCCAAGUGGUUGGCGGCGGCACCACCACCAUCCUGCCCCACUCUGCACCAC_____________________UUCUGCACCACCUC
............((((((((.(((((.............))))))))......)))))................................... (-14.02 = -14.02 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 10,267,131 – 10,267,224
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 81.40
Mean single sequence MFE -30.43
Consensus MFE -25.20
Energy contribution -25.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.99
Structure conservation index 0.83
SVM decision value 2.52
SVM RNA-class probability 0.994879
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10267131 93 - 27905053
GAGGUGGUGUAGAAGUUGUACAGAAGUGGUGCAGAGUGGUGCAGAAUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU
...(((((((......(((((.......)))))(((((((((........))....((((((((....)))))))))))))))...))))))) ( -33.30)
>DroSec_CAF1 124716 72 - 1
GAGGUGGUGCAGAA---------------------GUGGUGCAGAGUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU
..((((...(..((---------------------(((((((........))....((((((((....))))))))))))))).)..)))).. ( -27.40)
>DroSim_CAF1 123859 72 - 1
GAGGUGGUGCCGAA---------------------GUGGUGCAGAGUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU
..((((...((.((---------------------(((((((........))....((((((((....)))))))))))))))))..)))).. ( -30.60)
>consensus
GAGGUGGUGCAGAA_____________________GUGGUGCAGAGUGGGGCAGGAUGGUGGUGGUGCCGCCGCCAACCACUUGGAAUAUCAU
.(((((((...............................(((........)))...((((((((....))))))))))))))).......... (-25.20 = -25.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:08 2006