Locus 3773

Sequence ID 3R_DroMel_CAF1
Location 10,236,116 – 10,236,221
Length 105
Max. P 0.745845
window6043

overview

Window 3

Location 10,236,116 – 10,236,221
Length 105
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.75
Mean single sequence MFE -32.15
Consensus MFE -19.04
Energy contribution -19.09
Covariance contribution 0.06
Combinations/Pair 1.27
Mean z-score -1.79
Structure conservation index 0.59
SVM decision value 0.46
SVM RNA-class probability 0.745845
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 10236116 105 - 27905053
UGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUUACCUUGAUUGCGGACGCAACGAGGCAUCGCCGGCAACCAAAUCGAAUG---UUGCCUAUAUGCGCACCCUG
.((((.....))))............(((((((........)))))))((.((((....(((...)))((((((..........)---)))))....))))..))... ( -29.40)
>DroVir_CAF1 111155 93 - 1
------UUGCAGGCAACCAUUCCACUGCAAUCGUUUAACCUUGAUUGCGGACGCAGCGAGGUGG------UCGCCAAGCCGAACG---UUGCCUACAUGCGGACGCUG
------.((.(((((((..(((..(((((((((........))))))))).....((..(((..------..)))..)).))).)---)))))).)).((....)).. ( -30.50)
>DroGri_CAF1 98919 105 - 1
UGCGUGUUGCAGGCAACCAUUCCAUUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGGCAG---CAGCAGCCAAGCCAAAAGUUGUUGCCUAUAUGCGAACGCUG
.((((((((....))))...(((...(((((((........))))))))))((((...((((((---((((.............))))))))))...)))).)))).. ( -38.12)
>DroWil_CAF1 107774 102 - 1
---UGCUUGCAGGCAACCAUUCCAUUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGACGACGGCGACAACCAAAUCGAAUG---UUGCCUACAUGCGCACCCUA
---.((.((.(((((((.((((..(((((((((........))))))))).(((..((...))...)))...........)))))---)))))).)).))........ ( -30.40)
>DroMoj_CAF1 103769 95 - 1
----UGUUGCAGGCAACCAUUCCACUGCAAUCGUUCAACCUUGAUUGCGGACGCAGCGAGGUGG------CUGCCAAGCCGAGCA---UUGCCUAUAUGCGCACAUUG
----(((.((.(((..........(((((((((........)))))))))..(((((......)------))))...)))..(((---(.......)))))))))... ( -33.00)
>DroAna_CAF1 85528 96 - 1
UGUUCCUUUCAGGCCACCAUUCCACUGCAGUCGUUUAACCUUGAUUGCGGACGCAGCGAGG---------CAGCCAAAUCGAAUG---UUGCCUACAUGCGCACCCUG
.........((((...........(((((((((........))))))))).((((...(((---------((((..........)---))))))...))))...)))) ( -31.50)
>consensus
____UCUUGCAGGCAACCAUUCCACUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGGCGG______CAGCCAAACCGAAUG___UUGCCUACAUGCGCACCCUG
.........(((............(((((((((........))))))))).((((...((((((........................))))))...))))....))) (-19.04 = -19.09 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:40 2006